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@@ -643,20 +643,8 @@ function trpial_feature_get_formatted_sequence($feature_id, $feature_name,
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WHEN FL.fmin - $2 <= 0 THEN FL.fmin
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ELSE $2
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END
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- END as downstream,
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-
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- CASE
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- WHEN FL.strand >= 0 THEN
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- CASE
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- WHEN FL.fmin - $1 <= 0 THEN substring(OF.residues from 1 for ((FL.fmax - FL.fmin) + FL.fmin))
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- ELSE substring(OF.residues from (FL.fmin - $1 + 1) for ((FL.fmax - FL.fmin) + $1 + $2))
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- END
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- WHEN FL.strand < 0 THEN
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- CASE
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- WHEN FL.fmin - $2 <= 0 THEN substring(OF.residues from 1 for ((FL.fmax - FL.fmin) + FL.fmin))
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- ELSE substring(OF.residues from (FL.fmin - $2 + 1) for ((FL.fmax - FL.fmin) + $1 + $2))
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- END
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- END as residues
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+ END as downstream,
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+ substring(OF.residues from (adjfmin + 1) for (upstream + (FL.fmax - FL.fmin) + downstream) as residues
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FROM featureloc FL
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INNER JOIN feature SF on FL.feature_id = SF.feature_id
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INNER JOIN cvterm SCVT on SF.type_id = SCVT.cvterm_id
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spficklin