|
@@ -505,12 +505,12 @@ function tripal_cv_obo_add_synonyms($term, $cvterm) {
|
|
|
if (!$results) {
|
|
|
// build a 'term' object so we can add the missing term
|
|
|
$term = array(
|
|
|
- 'name' => array($scope),
|
|
|
- 'id' => array("internal:$scope"),
|
|
|
- 'definition' => array(''),
|
|
|
- 'is_obsolete' => array(0),
|
|
|
+ 'name' => $scope,
|
|
|
+ 'id' => "internal:$scope",
|
|
|
+ 'definition' => '',
|
|
|
+ 'is_obsolete' => 0,
|
|
|
);
|
|
|
- $syntype = tripal_cv_add_cvterm($term, $syncv, 0, 1);
|
|
|
+ $syntype = tripal_cv_add_cvterm($term, $syncv->name, 0, 1);
|
|
|
if (!$syntype) {
|
|
|
tripal_cv_obo_quiterror("Cannot add synonym type: internal:$scope");
|
|
|
}
|
|
@@ -769,7 +769,6 @@ function tripal_cv_obo_add_dbxref($db_id, $accession, $version='', $description=
|
|
|
if (!db_query($sql, $db_id, $accession, $version, $description)) {
|
|
|
tripal_cv_obo_quiterror("Failed to insert the dbxref record $accession");
|
|
|
}
|
|
|
- print "Added Dbxref accession: $accession\n";
|
|
|
$dbxref = db_fetch_object(db_query($dbxsql, $db_id, $accession));
|
|
|
}
|
|
|
return $dbxref;
|