|
|
@@ -1,5 +1,6 @@
|
|
|
- <h3>Tripal Feature Administrative Tools Quick Links:</h3>
|
|
|
+ <h3>Tripal Feature Quick Links:</h3>
|
|
|
<ul>
|
|
|
+ <li><a href="<?php print url("find/sequences") ?>">Retrieve Sequences</a></li>
|
|
|
<li><a href="<?php print url("admin/tripal/tripal_feature/configuration") ?>">Feature Configuration</a></li>
|
|
|
<li><a href="<?php print url("admin/tripal/tripal_feature/fasta_loader") ?>">Import a multi-FASTA file</a></li>
|
|
|
<li><a href="<?php print url("admin/tripal/tripal_feature/gff3_load") ?>">Import a GFF3 file</a></li>
|
|
|
@@ -79,6 +80,15 @@
|
|
|
<p>Aside from data loading and feature page setup (as described in the Setup section above),
|
|
|
The Tripal feature module also provides the following functionality
|
|
|
<ul>
|
|
|
+ <li><p><b>Retrieve Sequences</b>: A tool to <?php print l('retrieve sequences','find/sequences') ?> is provided
|
|
|
+ which allows end-users to download sequences in FASTA format. The site admin must first load sequence residues
|
|
|
+ as well as alignments. The <?php print l('organism_feature_count', 'admin/tripal/mviews') ?> and
|
|
|
+ <?php print l('analysis_organism', 'admin/tripal/mviews') ?> materialized
|
|
|
+ views must be populated before using this tool. Those views should be re-populated
|
|
|
+ when new data is added. If you use the <?php print l('jquery_update module', 'http://drupal.org/project/jquery_update') ?>
|
|
|
+ the tool may break. You will need to update the jquery_update/replace/jquery.form.js file with <?php
|
|
|
+ print l('a more recent version','https://raw.github.com/malsup/form/master/jquery.form.js') ?>. </p></li>
|
|
|
+
|
|
|
<li><p><b>Generic Feature URL</b>: As described in the setup instructions above, it is often convenient to have a
|
|
|
simple URL for each feature page. For example, http://www.mygenomesite.org/[feature], where [feature] is a
|
|
|
unique identifier for a feature page. The
|
spficklin