Coding Standards: Final cleanup for tripal_cv; added @coder-ignore for errors to be ignored

tripal_cv/tripal_cv.coder_ignores.txt

@@ -4,8 +4,8 @@
 
 ; This query selects from a non-drupal schema where the database prefixes are not
 ; applied and thus the curcly brackets ({}) are not needed
-tripal_cv.module:1059:sql
+tripal_cv.module:1062:sql
 
 ; Need to use POST since this is part of a JS callback
-tripal_cv.module:407:security
-tripal_cv.module:813:security
+tripal_cv.module:408:security
+tripal_cv.module:815:security

tripal_cv/tripal_cv.module

@@ -404,6 +404,7 @@ function tripal_cv_select_form() {
 function tripal_ajax_cv_edit() {
 
   // get the database id, build the form and then return the JSON object
+  // @coder-ignore: Use $POST as part of AJAX
   $cvid = $_POST['cvid'];
   $form = drupal_get_form('tripal_cv_edit_form', $cvid);
   drupal_json(array('status' => TRUE, 'data' => $form));
@@ -810,6 +811,7 @@ function tripal_cv_add_cvterm_callback() {
 
   // Retrieve the form from the cache
   $form_state = array('storage' => NULL);
+  // @coder-ignore: Use $POST as part of AJAX
   $form_build_id = $_POST['form_build_id'];
   $form = form_get_cache($form_build_id, $form_state);
 
@@ -1056,6 +1058,7 @@ function tripal_cv_update_cvtermpath($cvid = NULL, $job_id = NULL) {
   print "\nUpdating cvtermpath for $cv->name...\n";
 
   // now fill the cvtermpath table
+  // @coder-ignore: using a function rather then tablename therefore table prefixing doesn't apply
   $sql = "SELECT * FROM fill_cvtermpath('%s')";
   db_query($sql, $cv->name);
   tripal_db_set_active($previous_db);

tripal_cv/tripal_cv.views.inc

@@ -41,7 +41,7 @@ function tripal_cv_views_data() {
     );
     foreach ($tables as $tablename) {
       if (!tripal_views_is_integrated($tablename, 10)) {
-        $table_integration_array = tripal_views_get_integration_array_for_chado_table($tablename,TRUE);
+        $table_integration_array = tripal_views_get_integration_array_for_chado_table($tablename, TRUE);
         tripal_views_integration_add_entry($table_integration_array);
       }
     }
@@ -56,7 +56,7 @@ function tripal_cv_views_data() {
     );
     foreach ($tables as $tablename) {
       if (!tripal_views_is_integrated($tablename, 10)) {
-        $table_integration_array = tripal_views_get_integration_array_for_chado_table($tablename,FALSE);
+        $table_integration_array = tripal_views_get_integration_array_for_chado_table($tablename, FALSE);
         tripal_views_integration_add_entry($table_integration_array);
       }
     }