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+<?php
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+// $Id: views-view-table.tpl.php,v 1.8 2009/01/28 00:43:43 merlinofchaos Exp $
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+/**
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+ * @file views-view-table.tpl.php
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+ * Template to display a view as a table.
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+ *
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+ * - $title : The title of this group of rows. May be empty.
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+ * - $header: An array of header labels keyed by field id.
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+ * - $fields: An array of CSS IDs to use for each field id.
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+ * - $class: A class or classes to apply to the table, based on settings.
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+ * - $row_classes: An array of classes to apply to each row, indexed by row
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+ * number. This matches the index in $rows.
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+ * - $rows: An array of row items. Each row is an array of content.
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+ * $rows are keyed by row number, fields within rows are keyed by field ID.
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+ * @ingroup views_templates
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+ */
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+?>
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+
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+<?php
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+$total = $view->total_rows;
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+$query = $view->build_info['query'];
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+$pager = $view->pager;
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+$limit = $pager ['items_per_page'];
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+$offset = $pager ['current_page'] * $limit;
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+$args = $view->build_info['query_args'];
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+global $base_url;
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+?>
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+
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+<a id="tripal_search_unigene-result-top" name="search_results">
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+ Your search produced <b><?php print $total ?></b> results<br>
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+<i> Note: To get complete annotation for a sequence, click on the sequence name.</i>
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+</a>
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+<table class="tripal_search_unigene-table <?php print $class; ?> tripal-table-horz">
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+ <?php if (!empty($title)) : ?>
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+ <caption><?php print $title; ?></caption>
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+ <?php endif; ?>
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+ <thead>
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+ <tr class="tripal_search_unigene-table-header tripal-table-header">
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+ <?php foreach ($header as $field => $label): ?>
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+ <th class="views-field views-field-<?php print $fields[$field]; ?>">
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+ <?php print $label; ?>
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+ </th>
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+ <?php endforeach; ?>
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+ </tr>
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+ </thead>
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+ <tbody>
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+ <?php foreach ($rows as $count => $row):
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+ $rowclass = "";
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+ if ($count % 2 != 0) {
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+ $rowclass = "tripal_search_unigene-table-even-row tripal-table-even-row";
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+ } else {
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+ $rowclass = "tripal_search_unigene-table-odd-row tripal-table-odd-row";
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+ }
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+ ?>
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+ <tr class="<?php print $rowclass?> <?php print implode(' ', $row_classes[$count]); ?>">
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+ <?php foreach ($row as $field => $content): ?>
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+ <td class="views-field views-field-<?php print $fields[$field]; ?>">
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+ <?php print $content; ?>
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+ </td>
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+ <?php endforeach; ?>
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+ </tr>
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+ <?php endforeach; ?>
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+ </tbody>
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+</table>
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+
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+<?php /* if ($count != 0) {
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+ // Generate Excel files
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+ // set parameters for excel file
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+ $param_excel= array();
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+ global $user;
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+ $dir = file_directory_path().'/tripal/tripal_search_unigene/'.session_id();
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+ if (!file_exists($dir)) {
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+ mkdir ($dir, 0777);
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+ }
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+ $file =session_id().'/unigene_search_result.xls';
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+
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+ $param_excel['sheet_name'] = 'unigene_search';
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+ $path = "/tripal/tripal_search_unigene/$file";
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+ $param_excel['filename'] = file_directory_path().$path;
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+ $path_url =url("sites/default/files/tripal/tripal_search_unigene/$file");
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+ # set SQL
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+ $sql = "$query LIMIT $limit OFFSET $offset";
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+ # create heades
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+ $col_chr = 'A';
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+ $headers = array();
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+ $headers[$col_chr++] = array('align' => 'left', 'width' => 20, 'type' => 'hyperlink', 'field' => 'unigene_for_search_feature_name', 'heading' => 'Feature name');
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+ $headers[$col_chr++] = array('align' => 'left', 'width' => 10, 'type' => 'text', 'field' => 'unigene_for_search_organism_common_name', 'heading' => 'Organism');
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+ $headers[$col_chr++] = array('align' => 'left', 'width' => 10, 'type' => 'text', 'field' => 'unigene_for_search_feature_seqlen', 'heading' => 'Length');
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+ $headers[$col_chr++] = array('align' => 'left', 'width' => 10, 'type' => 'text', 'field' => 'unigene_for_search_feature_type', 'heading' => 'Type');
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+ $headers[$col_chr++] = array('align' => 'left', 'width' => 20, 'type' => 'text', 'field' => 'unigene_for_search_go_term', 'heading' => 'GO term');
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+ $headers[$col_chr++] = array('align' => 'left', 'width' => 20, 'type' => 'text', 'field' => 'unigene_for_search_blast_value', 'heading' => 'Blast');
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+ $headers[$col_chr++] = array('align' => 'left', 'width' => 20, 'type' => 'text', 'field' => 'unigene_for_search_kegg_value', 'heading' => 'KEGG');
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+ $headers[$col_chr++] = array('align' => 'left', 'width' => 20, 'type' => 'text', 'field' => 'unigene_for_search_interpro_value', 'heading' => 'Interpro');
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+
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+ # populate data
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+ $result = chado_query($sql, $args);
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+ $data = array();
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+ while ($row = db_fetch_array($result)) {
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+ $data[] = array ('unigene_for_search_feature_name' => $row['unigene_for_search_feature_name'],
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+ 'hyperlink_unigene_for_search_feature_name' => "$base_url/ID".$row['unigene_for_search_feature_id'],
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+ 'unigene_for_search_organism_common_name' => $row['unigene_for_search_organism_common_name'],
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+ 'unigene_for_search_feature_seqlen' => $row['unigene_for_search_feature_seqlen'],
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+ 'unigene_for_search_feature_type' => $row['unigene_for_search_feature_type'],
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+ 'unigene_for_search_go_term' => $row['unigene_for_search_go_term'],
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+ 'unigene_for_search_blast_value' => $row['unigene_for_search_blast_value'],
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+ 'unigene_for_search_kegg_value' => $row['unigene_for_search_kegg_value'],
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+ 'unigene_for_search_interpro_value' => $row['unigene_for_search_interpro_value']
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+ );
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+ }
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+ # add headers and data
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+ $param_excel['contents']['sheet']['headers']= $headers;
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+ $param_excel['contents']['sheet']['data']= $data;
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+ # generate excel
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+ ml_generate_excel($param_excel);
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+ print " <a href=\"$path_url\">Download as Excel file</a>";
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+
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+}
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+*/?>
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+
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+<?php
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+# ----------------------------------------- #
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+# [UD] ml_generate_excel
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+# ----------------------------------------- #
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+function ml_generate_excel ($param_excel) {
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+ # get and update parameters
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+ $writer = ($param_excel['version'] == '2007') ? 'Excel2007' : 'Excel5';
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+ $link_clr = (empty($param_excel['link_clr'])) ? '0000FF' : $param_excel['link_clr'];
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+ $filename = $param_excel['filename'];
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+ if (!preg_match("/(xls|xlsx)$/", $filename)) {
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+ $filename = ($param_excel['version'] == '2007') ? $filename.'.xlsx' : $filename.'.xls';
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+ }
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+ /*********************************************/
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+ # create an excel file
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+ /*********************************************/
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+ # create new PHPExcel object
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+ $excel = new PHPExcel();
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+ # Set properties
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+ $excel->getProperties()->setCreator("Main Lab");
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+ $excel->getProperties()->setLastModifiedBy("Main Lab");
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+ $excel->getProperties()->setTitle("Office 2007 XLSX Document");
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+ $excel->getProperties()->setSubject("");
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+ $excel->getProperties()->setKeywords("");
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+ $excel->getProperties()->setCategory("");
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+ $excel->getProperties()->setDescription("");
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+ # set default styles
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+ $excel->getDefaultStyle()->getFont()->setName('Times New Roman');
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+ $excel->getDefaultStyle()->getFont()->setSize(11);
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+ # create worksheets
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+ $sheet_no= 0;
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+ foreach ($param_excel['contents'] as $sheet_name => $sheet) {
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+ if ($sheet_no != 0) {
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+ # add a new worksheet
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+ $excel->createSheet();
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+ }
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+ # set active sheet
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+ $excel->setActiveSheetIndex($sheet_no);
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+ # get current worksheet
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+ $worksheet = $excel->getActiveSheet();
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+ # set title for this sheet
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+ $worksheet->setTitle($sheet_name);
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+ # get headers
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+ $headers= $param_excel['contents'][$sheet_name]['headers'];
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+ # set style and headings for headers
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+ foreach ($headers as $col_chr => $prop) {
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+ # set alignment for column
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+ $align= PHPExcel_Style_Alignment::HORIZONTAL_LEFT;
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+ if ($prop['align'] == 'right') {
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+ $align= PHPExcel_Style_Alignment::HORIZONTAL_RIGHT;
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+ }
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+ else if ($prop['align'] == 'center') {
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+ $align= PHPExcel_Style_Alignment::HORIZONTAL_CENTER;
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+ }
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+ $worksheet->getStyle($col_chr.'1')->getAlignment()->setHorizontal($align);
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+ # set width
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+ $worksheet->getColumnDimension($col_chr)->setWidth($prop['width']);
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+ $worksheet->getStyle($col_chr.'1')->getFont()->setBold(true);
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+ $worksheet->getStyle($col_chr.'1')->getFill()->setFillType(PHPExcel_Style_Fill::FILL_SOLID);
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+ $worksheet->getStyle($col_chr.'1')->getFill()->getStartColor()->setARGB('FFCDCDCD');
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+ $worksheet->setCellValue($col_chr.'1', $prop['heading']);
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+ }
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+ # add data to current worksheet
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+ foreach ($param_excel['contents'][$sheet_name]['data'] as $idx => $row) {
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+ foreach ($headers as $col_chr => $prop) {
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+ $loc= $col_chr.($idx+2);
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+ # set alignment for cell
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+ $align= PHPExcel_Style_Alignment::HORIZONTAL_LEFT;
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+ if ($prop['align'] == 'right') {
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+ $align= PHPExcel_Style_Alignment::HORIZONTAL_RIGHT;
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+ }
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+ else if ($prop['align'] == 'center') {
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+ $align= PHPExcel_Style_Alignment::HORIZONTAL_CENTER;
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+ }
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+ $worksheet->getStyle($loc)->getAlignment()->setHorizontal($align);
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+
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+ if (!empty($row[$prop['field']])) {
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+ # set cell value
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+ if ($prop['type'] == 'text') {
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+ $worksheet->setCellValue($loc, $row[$prop['field']]);
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+ }
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+ else if ($prop['type'] == 'hyperlink') {
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+ $worksheet->setCellValue($loc, $row[$prop['field']]);
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+ if ($row['hyperlink_'.$prop['field']]) {
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+ # add underline
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+ $worksheet->getStyle($loc)->getFont()->setUnderline(PHPExcel_Style_Font::UNDERLINE_SINGLE);
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+ # set link color
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+ $worksheet->getStyle($loc)->getFont()->getColor()->setRGB($link_clr);
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+ # set URL
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+ $worksheet->getCell($loc)->getHyperlink()->setUrl($row['hyperlink_'.$prop['field']]);
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+ }
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+ }
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+ }
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+ }
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+ }
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+ $sheet_no++;
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+ }
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+ # create excel file
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+ $excel->setActiveSheetIndex(0);
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+ $objWriter = PHPExcel_IOFactory::createWriter($excel, $writer);
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+ $objWriter->save($filename);
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+}
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+?>
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ccheng