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@@ -95,7 +95,7 @@ function tripal_chado_bundle_fields_info_base(&$info, $details, $entity_type, $b
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array('%table_name' => $table_name, '%column_name' => $column_name)), 'error');
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continue;
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}
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- $field_name = strtolower($cvterm->dbxref_id->db_id->name . '__' . preg_replace('/ /', '_', $cvterm->name));
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+ $field_name = strtolower($cvterm->dbxref_id->db_id->name . '__' . preg_replace('/[^\w]/', '_', $cvterm->name));
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$field_name = substr($field_name, 0, 32);
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// Skip the primary key field.
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@@ -103,9 +103,9 @@ function tripal_chado_bundle_fields_info_base(&$info, $details, $entity_type, $b
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continue;
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}
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- // Skip the type field that will always be custom
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- if (($table_name == $type_table and $column_name == $type_column) or
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- $column_name == 'type_id') {
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+ // If the type_id defines the content type and it's part of the
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+ // base table and this column is the type_id then skip it.
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+ if (!$type_table and $type_column and $column_name == $type_column) {
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continue;
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}
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@@ -172,7 +172,9 @@ function tripal_chado_bundle_fields_info_base(&$info, $details, $entity_type, $b
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//
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// PUB TABLE
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//
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- elseif ($table_name == 'pub' and $column_name == 'uniquename') {
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+ if ($table_name == 'pub' and (
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+ $column_name == 'uniquename' or $column_name == 'title' or
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+ $column_name == 'volumetitle')) {
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$base_info['type'] = 'text';
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$base_info['settings']['text_processing'] = 0;
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}
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@@ -194,12 +196,8 @@ function tripal_chado_bundle_fields_info_custom(&$info, $details, $entity_type,
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$schema = chado_get_schema($table_name);
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- // BASE TYPE_ID
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- // Exclude the type_id field on base tables where content types are mapped
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- // by the type_id field or on the organism table where the type_id is mean
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- // as an infraspecific name type.
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- if (array_key_exists('type_id', $schema['fields']) and
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- $table_name != 'organism' and $type_column != 'type_id') {
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+ // An additional type for the publication
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+ if ($table_name == 'pub') {
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$field_name = 'schema__additional_type';
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$field_type = 'schema__additional_type';
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$info[$field_name] = array(
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@@ -304,7 +302,7 @@ function tripal_chado_bundle_fields_info_custom(&$info, $details, $entity_type,
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);
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}
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- // PROTEIN & CDS SEQUENCE
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+ // PROTEIN & CDS
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if ($table_name == 'feature' and
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($bundle->label == 'mRNA' or $bundle->label == 'transcript')) {
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$field_name = 'data__protein_sequence';
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@@ -332,21 +330,21 @@ function tripal_chado_bundle_fields_info_custom(&$info, $details, $entity_type,
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// );
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}
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- // GENE TRANSCRIPTS
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- $rel_table = $table_name . '_relationship';
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- if (chado_table_exists($rel_table) and $bundle->label == 'gene') {
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- $field_name = 'so__transcript';
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- $field_type = 'so__transcript';
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- $info[$field_name] = array(
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- 'field_name' => $field_name,
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- 'type' => $field_type,
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- 'cardinality' => FIELD_CARDINALITY_UNLIMITED,
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- 'locked' => FALSE,
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- 'storage' => array(
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- 'type' => 'field_chado_storage',
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- ),
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- );
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- }
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+// // GENE TRANSCRIPTS
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+// $rel_table = $table_name . '_relationship';
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+// if (chado_table_exists($rel_table) and $bundle->label == 'gene') {
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+// $field_name = 'so__transcript';
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+// $field_type = 'so__transcript';
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+// $info[$field_name] = array(
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+// 'field_name' => $field_name,
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+// 'type' => $field_type,
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+// 'cardinality' => FIELD_CARDINALITY_UNLIMITED,
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+// 'locked' => FALSE,
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+// 'storage' => array(
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+// 'type' => 'field_chado_storage',
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+// ),
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+// );
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+// }
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// ORGANISM TYPE_ID
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if ($table_name == 'organism' and array_key_exists('type_id', $schema['fields'])) {
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@@ -502,37 +500,37 @@ function tripal_chado_bundle_fields_info_linker(&$info, $details, $entity_type,
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);
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}
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- // GENOTYPE
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- $genotype_table = $table_name . '_genotype';
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- if (chado_table_exists($genotype_table)) {
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- $field_name = 'so__genotype';
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- $field_type = 'so__genotype';
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- $info[$field_name] = array(
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- 'field_name' => $field_name,
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- 'type' => $field_type,
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- 'cardinality' => FIELD_CARDINALITY_UNLIMITED,
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- 'locked' => FALSE,
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- 'storage' => array(
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- 'type' => 'field_chado_storage',
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- ),
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- );
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- }
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+// // GENOTYPE
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+// $genotype_table = $table_name . '_genotype';
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+// if (chado_table_exists($genotype_table)) {
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+// $field_name = 'so__genotype';
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+// $field_type = 'so__genotype';
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+// $info[$field_name] = array(
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+// 'field_name' => $field_name,
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+// 'type' => $field_type,
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+// 'cardinality' => FIELD_CARDINALITY_UNLIMITED,
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+// 'locked' => FALSE,
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+// 'storage' => array(
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+// 'type' => 'field_chado_storage',
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+// ),
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+// );
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+// }
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- // PHENOTYPE
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- $phenotype_table = $table_name . '_phenotype';
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- if (chado_table_exists($phenotype_table)) {
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- $field_name = 'sbo__phenotype';
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- $field_type = 'sbo__phenotype';
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- $info[$field_name] = array(
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- 'field_name' => $field_name,
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- 'type' => $field_type,
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- 'cardinality' => FIELD_CARDINALITY_UNLIMITED,
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- 'locked' => FALSE,
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- 'storage' => array(
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- 'type' => 'field_chado_storage',
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- ),
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- );
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- }
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+// // PHENOTYPE
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+// $phenotype_table = $table_name . '_phenotype';
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+// if (chado_table_exists($phenotype_table)) {
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+// $field_name = 'sbo__phenotype';
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+// $field_type = 'sbo__phenotype';
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+// $info[$field_name] = array(
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+// 'field_name' => $field_name,
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+// 'type' => $field_type,
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+// 'cardinality' => FIELD_CARDINALITY_UNLIMITED,
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+// 'locked' => FALSE,
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+// 'storage' => array(
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+// 'type' => 'field_chado_storage',
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+// ),
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+// );
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+// }
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// PROPERTIES
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$prop_table = $table_name . 'prop';
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@@ -732,8 +730,8 @@ function tripal_chado_bundle_instances_info_base(&$info, $entity_type, $bundle,
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// have a special field for those.
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if ($table_name == 'organism' and ($column_name == 'type_id' or
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$column_name == 'infraspecific_name')) {
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- continue;
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- }
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+ continue;
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+ }
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// Don't create base fields for the primary key and the type_id field.
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if ($column_name == $pkey or $column_name == $type_column) {
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@@ -753,7 +751,7 @@ function tripal_chado_bundle_instances_info_base(&$info, $entity_type, $bundle,
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continue;
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}
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- $field_name = strtolower($cvterm->dbxref_id->db_id->name . '__' . preg_replace('/ /', '_', $cvterm->name));
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+ $field_name = strtolower($cvterm->dbxref_id->db_id->name . '__' . preg_replace('/[^\w]/', '_', $cvterm->name));
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$field_name = substr($field_name, 0, 32);
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// Skip the primary key field.
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@@ -761,8 +759,9 @@ function tripal_chado_bundle_instances_info_base(&$info, $entity_type, $bundle,
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continue;
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}
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- // Skip the type field.
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- if ($table_name == $type_table and $column_name == $type_column) {
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+ // If the type_id defines the content type and it's part of the
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+ // base table and this column is the type_id then skip it.
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+ if (!$type_table and $type_column and $column_name == $type_column) {
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continue;
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}
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@@ -856,46 +855,87 @@ function tripal_chado_bundle_instances_info_base(&$info, $entity_type, $bundle,
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unset($base_info['settings']['format']);
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}
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}
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- elseif ($base_info['label'] == 'Timeaccessioned') {
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+ if ($base_info['label'] == 'Timeaccessioned') {
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$base_info['label'] = 'Time Accessioned';
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$base_info['description'] = 'Please enter the time that this record was first added to the database.';
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}
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- elseif ($base_info['label'] == 'Timelastmodified') {
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+ if ($base_info['label'] == 'Timelastmodified') {
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$base_info['label'] = 'Time Last Modified';
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$base_info['description'] = 'Please enter the time that this record was last modified. The default is the current time.';
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}
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//
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// ORGANISM TABLE
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//
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- elseif ($table_name == 'organism' and $column_name == 'comment') {
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+ if ($table_name == 'organism' and $column_name == 'comment') {
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$base_info['label'] = 'Description';
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}
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//
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// PUB TABLE
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//
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- elseif ($table_name == 'pub' and $column_name == 'uniquename') {
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- $base_info['widget_type'] = 'text_textfield';
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+ if ($table_name == 'pub') {
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+ if ($column_name == 'title' or $column_name == 'type_id') {
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+ $base_info['required'] = TRUE;
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+ }
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+ if($column_name == 'uniquename' or $column_name == 'title' or $column_name == 'volumetitle') {
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+ $base_info['widget']['type'] = 'text_textfield';
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+ $base_info['settings']['text_processing'] = '0';
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+ }
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+ if($column_name == 'uniquename') {
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+ $base_info['label'] = 'Unique Local Identifier';
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+ $base_info['required'] = TRUE;
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+ $base_info['description'] = 'This publication is housed in Chado whic requires a unique identifer (or name) be provided for every publication. This identifier need not be shown to end-users but it is required. Each site must decide on a format for this unique name.';
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+ }
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+ if($column_name == 'title') {
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+ $base_info['description'] = 'The title of the published work.';
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+ }
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+ if($column_name == 'series_name') {
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+ $base_info['description'] = 'The name media that produces a series of publications (e.g. journal, conference proceedings, etc.).';
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+ }
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+ if($column_name == 'issue') {
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+ $base_info['description'] = 'The issue of the series (e.g. journal) where the publication was printed.';
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+ }
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+ if($column_name == 'volume') {
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+ $base_info['description'] = 'The volume of the series (e.g. journal) where the publication was printed.';
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+ }
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+ if($column_name == 'pyear') {
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+ $base_info['label'] = 'Publication Year';
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+ $base_info['required'] = TRUE;
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+ }
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+ if($column_name == 'pages') {
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+ $base_info['label'] = 'Page Numbers';
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+ }
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+ if($column_name == 'pubplace') {
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+ $base_info['label'] = 'Publication Location';
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+ }
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+ if($column_name == 'volumetitle') {
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+ $base_info['label'] = 'Volumn Title';
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+ $base_info['label'] = 'The title of the volume (if applicable).';
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+ }
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+ if($column_name == 'miniref') {
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+ $base_info['label'] = 'Mini Local identifier';
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+ $base_info['description'] = 'Some sites use small identifiers for each publication. if your site uses this please provide the proper miniref for this publication.';
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+ }
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}
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//
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// ANALYSIS TABLE
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//
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- elseif ($table_name == 'analysis' and $column_name == 'name') {
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+ if ($table_name == 'analysis' and $column_name == 'name') {
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$base_info['required'] = TRUE;
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}
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- elseif ($table_name == 'analysis' and $column_name == 'program') {
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+ if ($table_name == 'analysis' and $column_name == 'program') {
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$base_info['description'] = 'The program name (e.g. blastx, blastp, sim4, genscan. If the analysis was not derived from a software package then provide a very brief description of the pipeline, workflow or method.';
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$base_info['label'] = 'Program, Pipeline, Workflow or Method Name';
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}
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- elseif ($table_name == 'analysis' and $column_name == 'algorithm') {
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+ if ($table_name == 'analysis' and $column_name == 'algorithm') {
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$base_info['label'] = 'Source Version';
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$base_info['description'] = 'The name of the algorithm used to produce the dataset if different from the program.';
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}
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- elseif ($table_name == 'analysis' and $column_name == 'programversion') {
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+ if ($table_name == 'analysis' and $column_name == 'programversion') {
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$base_info['label'] = 'Program Version';
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$base_info['description'] = 'The version of the program used to perform this analysis. (e.g. TBLASTX 2.0MP-WashU [09-Nov-2000]. Enter "n/a" if no version is available or applicable.';
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}
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- elseif ($table_name == 'analysis' and $column_name == 'timeexecuted') {
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+ if ($table_name == 'analysis' and $column_name == 'timeexecuted') {
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$base_info['label'] = 'Date Performed';
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$base_info['description'] = 'The date and time when the analysis was performed.';
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}
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@@ -909,7 +949,7 @@ function tripal_chado_bundle_instances_info_base(&$info, $entity_type, $bundle,
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//
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// PROJECT TABLE
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//
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- elseif ($table_name == 'project' and $column_name == 'description') {
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+ if ($table_name == 'project' and $column_name == 'description') {
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$base_info['label'] = 'Short Description';
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}
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$info[$field_name] = $base_info;
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@@ -934,12 +974,8 @@ function tripal_chado_bundle_instances_info_custom(&$info, $entity_type, $bundle
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$type_value = $details['chado_type_value'];
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|
$schema = chado_get_schema($table_name);
|
|
|
|
|
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- // BASE TYPE_ID
|
|
|
- // Exclude the type_id field on base tables where content types are mapped
|
|
|
- // by the type_id field or on the organism table where the type_id is mean
|
|
|
- // as an infraspecific name type.
|
|
|
- if (array_key_exists('type_id', $schema['fields']) and
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|
|
- $table_name != 'organism' and $type_column != 'type_id') {
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|
|
+ // An additional type for publications
|
|
|
+ if ($table_name == 'pub') {
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|
|
$field_name = 'schema__additional_type';
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|
|
$is_required = FALSE;
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|
|
if (array_key_exists('not null', $schema['fields']['type_id']) and
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|
|
@@ -950,14 +986,16 @@ function tripal_chado_bundle_instances_info_custom(&$info, $entity_type, $bundle
|
|
|
'field_name' => $field_name,
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|
|
'entity_type' => $entity_type,
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|
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'bundle' => $bundle->name,
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|
|
- 'label' => 'Type',
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|
|
- 'description' => 'Select a type for this record.',
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|
|
+ 'label' => 'Publication Type',
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|
+ 'description' => 'Select the publication type.',
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|
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'required' => $is_required,
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'settings' => array(
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|
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'auto_attach' => TRUE,
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|
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'chado_table' => $table_name,
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|
|
'chado_column' => 'type_id',
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|
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'base_table' => $table_name,
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|
+ 'vocabulary' => 'tripal_pub',
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|
|
+ 'parent_term' => 'TPUB:0000015',
|
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|
),
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|
|
'widget' => array(
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|
|
'type' => 'schema__additional_type_widget',
|
|
|
@@ -1245,38 +1283,38 @@ function tripal_chado_bundle_instances_info_custom(&$info, $entity_type, $bundle
|
|
|
}
|
|
|
|
|
|
|
|
|
- // GENE TRANSCRIPTS
|
|
|
- $rel_table = $table_name . '_relationship';
|
|
|
- if (chado_table_exists($rel_table) and $bundle->label == 'gene') {
|
|
|
- $field_name = 'so__transcript';
|
|
|
- $info[$field_name] = array(
|
|
|
- 'field_name' => $field_name,
|
|
|
- 'entity_type' => $entity_type,
|
|
|
- 'bundle' => $bundle->name,
|
|
|
- 'label' => 'Transcripts',
|
|
|
- 'description' => 'Transcripts that are part of this gene.',
|
|
|
- 'required' => FALSE,
|
|
|
- 'settings' => array(
|
|
|
- 'auto_attach' => FALSE,
|
|
|
- 'chado_table' => $rel_table,
|
|
|
- 'chado_column' => '',
|
|
|
- 'base_table' => $table_name,
|
|
|
- ),
|
|
|
- 'widget' => array(
|
|
|
- 'type' => 'so__transcript_widget',
|
|
|
- 'settings' => array(
|
|
|
- 'display_label' => 1,
|
|
|
- ),
|
|
|
- ),
|
|
|
- 'display' => array(
|
|
|
- 'default' => array(
|
|
|
- 'label' => 'above',
|
|
|
- 'type' => 'so__transcript_formatter',
|
|
|
- 'settings' => array(),
|
|
|
- ),
|
|
|
- ),
|
|
|
- );
|
|
|
- }
|
|
|
+// // GENE TRANSCRIPTS
|
|
|
+// $rel_table = $table_name . '_relationship';
|
|
|
+// if (chado_table_exists($rel_table) and $bundle->label == 'gene') {
|
|
|
+// $field_name = 'so__transcript';
|
|
|
+// $info[$field_name] = array(
|
|
|
+// 'field_name' => $field_name,
|
|
|
+// 'entity_type' => $entity_type,
|
|
|
+// 'bundle' => $bundle->name,
|
|
|
+// 'label' => 'Transcripts',
|
|
|
+// 'description' => 'Transcripts that are part of this gene.',
|
|
|
+// 'required' => FALSE,
|
|
|
+// 'settings' => array(
|
|
|
+// 'auto_attach' => FALSE,
|
|
|
+// 'chado_table' => $rel_table,
|
|
|
+// 'chado_column' => '',
|
|
|
+// 'base_table' => $table_name,
|
|
|
+// ),
|
|
|
+// 'widget' => array(
|
|
|
+// 'type' => 'so__transcript_widget',
|
|
|
+// 'settings' => array(
|
|
|
+// 'display_label' => 1,
|
|
|
+// ),
|
|
|
+// ),
|
|
|
+// 'display' => array(
|
|
|
+// 'default' => array(
|
|
|
+// 'label' => 'above',
|
|
|
+// 'type' => 'so__transcript_formatter',
|
|
|
+// 'settings' => array(),
|
|
|
+// ),
|
|
|
+// ),
|
|
|
+// );
|
|
|
+// }
|
|
|
|
|
|
// ORGANISM TYPE_ID
|
|
|
if ($table_name == 'organism' and array_key_exists('type_id', $schema['fields'])) {
|
|
|
@@ -1588,75 +1626,75 @@ function tripal_chado_bundle_instances_info_linker(&$info, $entity_type, $bundle
|
|
|
);
|
|
|
}
|
|
|
|
|
|
- // GENOTYPE
|
|
|
- $genotype_table = $table_name . '_genotype';
|
|
|
- if (chado_table_exists($genotype_table)) {
|
|
|
- $field_name = 'so__genotype';
|
|
|
- $schema = chado_get_schema($genotype_table);
|
|
|
- $pkey = $schema['primary key'][0];
|
|
|
- $info[$field_name] = array(
|
|
|
- 'field_name' => $field_name,
|
|
|
- 'entity_type' => $entity_type,
|
|
|
- 'bundle' => $bundle->name,
|
|
|
- 'label' => 'Genotype',
|
|
|
- 'description' => 'The genotypes associated with this record.',
|
|
|
- 'required' => FALSE,
|
|
|
- 'settings' => array(
|
|
|
- 'auto_attach' => FALSE,
|
|
|
- 'chado_table' => $genotype_table,
|
|
|
- 'chado_column' => $pkey,
|
|
|
- 'base_table' => $table_name,
|
|
|
- ),
|
|
|
- 'widget' => array(
|
|
|
- 'type' => 'so__genotype_widget',
|
|
|
- 'settings' => array(
|
|
|
- 'display_label' => 1,
|
|
|
- ),
|
|
|
- ),
|
|
|
- 'display' => array(
|
|
|
- 'default' => array(
|
|
|
- 'label' => 'hidden',
|
|
|
- 'type' => 'so__genotype_formatter',
|
|
|
- 'settings' => array(),
|
|
|
- ),
|
|
|
- ),
|
|
|
- );
|
|
|
- }
|
|
|
+// // GENOTYPE
|
|
|
+// $genotype_table = $table_name . '_genotype';
|
|
|
+// if (chado_table_exists($genotype_table)) {
|
|
|
+// $field_name = 'so__genotype';
|
|
|
+// $schema = chado_get_schema($genotype_table);
|
|
|
+// $pkey = $schema['primary key'][0];
|
|
|
+// $info[$field_name] = array(
|
|
|
+// 'field_name' => $field_name,
|
|
|
+// 'entity_type' => $entity_type,
|
|
|
+// 'bundle' => $bundle->name,
|
|
|
+// 'label' => 'Genotype',
|
|
|
+// 'description' => 'The genotypes associated with this record.',
|
|
|
+// 'required' => FALSE,
|
|
|
+// 'settings' => array(
|
|
|
+// 'auto_attach' => FALSE,
|
|
|
+// 'chado_table' => $genotype_table,
|
|
|
+// 'chado_column' => $pkey,
|
|
|
+// 'base_table' => $table_name,
|
|
|
+// ),
|
|
|
+// 'widget' => array(
|
|
|
+// 'type' => 'so__genotype_widget',
|
|
|
+// 'settings' => array(
|
|
|
+// 'display_label' => 1,
|
|
|
+// ),
|
|
|
+// ),
|
|
|
+// 'display' => array(
|
|
|
+// 'default' => array(
|
|
|
+// 'label' => 'hidden',
|
|
|
+// 'type' => 'so__genotype_formatter',
|
|
|
+// 'settings' => array(),
|
|
|
+// ),
|
|
|
+// ),
|
|
|
+// );
|
|
|
+// }
|
|
|
|
|
|
- // PHENOTYPE
|
|
|
- $phenotype_table = $table_name . '_phenotype';
|
|
|
- if (chado_table_exists($phenotype_table)) {
|
|
|
- $field_name = 'sbo__phenotype';
|
|
|
- $schema = chado_get_schema($phenotype_table);
|
|
|
- $pkey = $schema['primary key'][0];
|
|
|
- $info[$field_name] = array(
|
|
|
- 'field_name' => $field_name,
|
|
|
- 'entity_type' => $entity_type,
|
|
|
- 'bundle' => $bundle->name,
|
|
|
- 'label' => 'Phenotype',
|
|
|
- 'description' => 'The phenotypes associated with this record.',
|
|
|
- 'required' => FALSE,
|
|
|
- 'settings' => array(
|
|
|
- 'auto_attach' => FALSE,
|
|
|
- 'chado_table' => $phenotype_table,
|
|
|
- 'chado_column' => $pkey,
|
|
|
- 'base_table' => $table_name,
|
|
|
- ),
|
|
|
- 'widget' => array(
|
|
|
- 'type' => 'sbo__phenotype_widget',
|
|
|
- 'settings' => array(
|
|
|
- 'display_label' => 1,
|
|
|
- ),
|
|
|
- ),
|
|
|
- 'display' => array(
|
|
|
- 'default' => array(
|
|
|
- 'label' => 'hidden',
|
|
|
- 'type' => 'sbo__phenotype_formatter',
|
|
|
- 'settings' => array(),
|
|
|
- ),
|
|
|
- ),
|
|
|
- );
|
|
|
- }
|
|
|
+// // PHENOTYPE
|
|
|
+// $phenotype_table = $table_name . '_phenotype';
|
|
|
+// if (chado_table_exists($phenotype_table)) {
|
|
|
+// $field_name = 'sbo__phenotype';
|
|
|
+// $schema = chado_get_schema($phenotype_table);
|
|
|
+// $pkey = $schema['primary key'][0];
|
|
|
+// $info[$field_name] = array(
|
|
|
+// 'field_name' => $field_name,
|
|
|
+// 'entity_type' => $entity_type,
|
|
|
+// 'bundle' => $bundle->name,
|
|
|
+// 'label' => 'Phenotype',
|
|
|
+// 'description' => 'The phenotypes associated with this record.',
|
|
|
+// 'required' => FALSE,
|
|
|
+// 'settings' => array(
|
|
|
+// 'auto_attach' => FALSE,
|
|
|
+// 'chado_table' => $phenotype_table,
|
|
|
+// 'chado_column' => $pkey,
|
|
|
+// 'base_table' => $table_name,
|
|
|
+// ),
|
|
|
+// 'widget' => array(
|
|
|
+// 'type' => 'sbo__phenotype_widget',
|
|
|
+// 'settings' => array(
|
|
|
+// 'display_label' => 1,
|
|
|
+// ),
|
|
|
+// ),
|
|
|
+// 'display' => array(
|
|
|
+// 'default' => array(
|
|
|
+// 'label' => 'hidden',
|
|
|
+// 'type' => 'sbo__phenotype_formatter',
|
|
|
+// 'settings' => array(),
|
|
|
+// ),
|
|
|
+// ),
|
|
|
+// );
|
|
|
+// }
|
|
|
|
|
|
// PROPERTIES
|
|
|
$prop_table = $table_name . 'prop';
|
|
|
@@ -1728,6 +1766,13 @@ function tripal_chado_bundle_instances_info_linker(&$info, $entity_type, $bundle
|
|
|
while ($prop = $props->fetchObject()) {
|
|
|
|
|
|
$term = chado_generate_var('cvterm', array('cvterm_id' => $prop->type_id));
|
|
|
+ $term = chado_expand_var($term, 'field', 'cvterm.definition');
|
|
|
+
|
|
|
+ // Skip the Publiation Type property for pubs as this is
|
|
|
+ // already handled by the pub.type_id field.
|
|
|
+ if ($term->name == 'Publication Type' and $term->cv_id->name == 'tripal_pub') {
|
|
|
+ continue;
|
|
|
+ }
|
|
|
|
|
|
// The tripal_analysis_KEGG, tripal_analysis_blast, and
|
|
|
// tripal_analysis_interpro modules store results in the analysisprop
|
|
|
@@ -1771,6 +1816,21 @@ function tripal_chado_bundle_instances_info_linker(&$info, $entity_type, $bundle
|
|
|
),
|
|
|
),
|
|
|
);
|
|
|
+
|
|
|
+ // Make some customizations to some fields
|
|
|
+ if ($term->name == 'Citation' and $term->cv_id->name == 'tripal_pub') {
|
|
|
+ $info[$field_name]['required'] = TRUE;
|
|
|
+ $info[$field_name]['description'] = t('All publications must have a unique citation.
|
|
|
+ Please enter the full citation for this publication. For PubMed style citations list
|
|
|
+ the last name of the author followed by initials. Each author should be separated by a comma. Next comes
|
|
|
+ the title, followed by the series title (e.g. journal name), publication date (4 digit year, 3 character Month, day), volume, issue and page numbers. You may also use HTML to provide a link in the citation.
|
|
|
+ Below is an example: <pre>Medeiros PM, Ladio AH, Santos AM, Albuquerque UP. <a href="http://www.ncbi.nlm.nih.gov/pubmed/23462414" target="_blank">Does the selection of medicinal plants by Brazilian local populations
|
|
|
+ suffer taxonomic influence?</a> J Ethnopharmacol. 2013 Apr 19; 146(3):842-52.</pre>');
|
|
|
+ $info[$field_name]['settings']['rows'] = 3;
|
|
|
+ }
|
|
|
+ if ($term->name == 'Abstract' and $term->cv_id->name == 'tripal_pub') {
|
|
|
+ $info[$field_name]['settings']['rows'] = 5;
|
|
|
+ }
|
|
|
}
|
|
|
}
|
|
|
}
|
Chun-Huai Cheng