|  | @@ -302,7 +302,6 @@ function tripal_chado_bundle_create_fields_custom(&$info, $details, $entity_type
 | 
											
												
													
														|  |          'chado_table' => $table_name,
 |  |          'chado_table' => $table_name,
 | 
											
												
													
														|  |          'chado_column' => 'residues',
 |  |          'chado_column' => 'residues',
 | 
											
												
													
														|  |          'base_table' => $table_name,
 |  |          'base_table' => $table_name,
 | 
											
												
													
														|  | -        'semantic_web' => tripal_get_chado_semweb_term($table_name, 'residues'),
 |  | 
 | 
											
												
													
														|  |        ),
 |  |        ),
 | 
											
												
													
														|  |      );
 |  |      );
 | 
											
												
													
														|  |    }
 |  |    }
 | 
											
										
											
												
													
														|  | @@ -323,7 +322,6 @@ function tripal_chado_bundle_create_fields_custom(&$info, $details, $entity_type
 | 
											
												
													
														|  |          'chado_table' => $table_name,
 |  |          'chado_table' => $table_name,
 | 
											
												
													
														|  |          'chado_column' => 'seqlen',
 |  |          'chado_column' => 'seqlen',
 | 
											
												
													
														|  |          'base_table' => $table_name,
 |  |          'base_table' => $table_name,
 | 
											
												
													
														|  | -        'semantic_web' => tripal_get_chado_semweb_term($table_name, 'seqlen'),
 |  | 
 | 
											
												
													
														|  |        ),
 |  |        ),
 | 
											
												
													
														|  |      );
 |  |      );
 | 
											
												
													
														|  |    }
 |  |    }
 | 
											
										
											
												
													
														|  | @@ -345,7 +343,6 @@ function tripal_chado_bundle_create_fields_custom(&$info, $details, $entity_type
 | 
											
												
													
														|  |          'chado_table' => $rel_table,
 |  |          'chado_table' => $rel_table,
 | 
											
												
													
														|  |          'chado_column' => '',
 |  |          'chado_column' => '',
 | 
											
												
													
														|  |          'base_table' => $table_name,
 |  |          'base_table' => $table_name,
 | 
											
												
													
														|  | -        'semantic_web' => 'SO:0000673',
 |  | 
 | 
											
												
													
														|  |        ),
 |  |        ),
 | 
											
												
													
														|  |      );
 |  |      );
 | 
											
												
													
														|  |    }
 |  |    }
 | 
											
										
											
												
													
														|  | @@ -365,7 +362,6 @@ function tripal_chado_bundle_create_fields_custom(&$info, $details, $entity_type
 | 
											
												
													
														|  |  //       'settings' => array(
 |  |  //       'settings' => array(
 | 
											
												
													
														|  |  //         'chado_table' => 'organism',
 |  |  //         'chado_table' => 'organism',
 | 
											
												
													
														|  |  //         'chado_column' => 'type_id',
 |  |  //         'chado_column' => 'type_id',
 | 
											
												
													
														|  | -//         'semantic_web' => 'TAXRANK:0000046',
 |  | 
 | 
											
												
													
														|  |  //       ),
 |  |  //       ),
 | 
											
												
													
														|  |  //     );
 |  |  //     );
 | 
											
												
													
														|  |  //   }
 |  |  //   }
 | 
											
										
											
												
													
														|  | @@ -402,7 +398,6 @@ function tripal_chado_bundle_create_fields_linker(&$info, $details, $entity_type
 | 
											
												
													
														|  |          'chado_table' => $contact_table,
 |  |          'chado_table' => $contact_table,
 | 
											
												
													
														|  |          'base_table' => $table_name,
 |  |          'base_table' => $table_name,
 | 
											
												
													
														|  |          'chado_column' => 'contact_id',
 |  |          'chado_column' => 'contact_id',
 | 
											
												
													
														|  | -        'semantic_web' => tripal_get_chado_semweb_term($table_name, 'contact_id'),
 |  | 
 | 
											
												
													
														|  |        ),
 |  |        ),
 | 
											
												
													
														|  |      );
 |  |      );
 | 
											
												
													
														|  |    }
 |  |    }
 | 
											
										
											
												
													
														|  | @@ -445,7 +440,6 @@ function tripal_chado_bundle_create_fields_linker(&$info, $details, $entity_type
 | 
											
												
													
														|  |          'chado_table' => $dbxref_table,
 |  |          'chado_table' => $dbxref_table,
 | 
											
												
													
														|  |          'chado_column' => $pkey,
 |  |          'chado_column' => $pkey,
 | 
											
												
													
														|  |          'base_table' => $table_name,
 |  |          'base_table' => $table_name,
 | 
											
												
													
														|  | -        'semantic_web' => 'SBO:0000554',
 |  | 
 | 
											
												
													
														|  |        ),
 |  |        ),
 | 
											
												
													
														|  |      );
 |  |      );
 | 
											
												
													
														|  |    }
 |  |    }
 | 
											
										
											
												
													
														|  | @@ -469,7 +463,6 @@ function tripal_chado_bundle_create_fields_linker(&$info, $details, $entity_type
 | 
											
												
													
														|  |          'chado_table' => $expression_table,
 |  |          'chado_table' => $expression_table,
 | 
											
												
													
														|  |          'chado_column' => $pkey,
 |  |          'chado_column' => $pkey,
 | 
											
												
													
														|  |          'base_table' => $table_name,
 |  |          'base_table' => $table_name,
 | 
											
												
													
														|  | -        'semantic_web' => 'local:expression',
 |  | 
 | 
											
												
													
														|  |        ),
 |  |        ),
 | 
											
												
													
														|  |      );
 |  |      );
 | 
											
												
													
														|  |    }
 |  |    }
 | 
											
										
											
												
													
														|  | @@ -492,7 +485,6 @@ function tripal_chado_bundle_create_fields_linker(&$info, $details, $entity_type
 | 
											
												
													
														|  |          'chado_table' => 'featureloc',
 |  |          'chado_table' => 'featureloc',
 | 
											
												
													
														|  |          'chado_column' => $pkey,
 |  |          'chado_column' => $pkey,
 | 
											
												
													
														|  |          'base_table' => 'feature',
 |  |          'base_table' => 'feature',
 | 
											
												
													
														|  | -        'semantic_web' => 'SO:position_of',
 |  | 
 | 
											
												
													
														|  |        ),
 |  |        ),
 | 
											
												
													
														|  |      );
 |  |      );
 | 
											
												
													
														|  |    }
 |  |    }
 | 
											
										
											
												
													
														|  | @@ -515,7 +507,6 @@ function tripal_chado_bundle_create_fields_linker(&$info, $details, $entity_type
 | 
											
												
													
														|  |          'chado_table' => 'featurepos',
 |  |          'chado_table' => 'featurepos',
 | 
											
												
													
														|  |          'chado_column' => $pkey,
 |  |          'chado_column' => $pkey,
 | 
											
												
													
														|  |          'base_table' => 'feature',
 |  |          'base_table' => 'feature',
 | 
											
												
													
														|  | -        'semantic_web' => 'SO:position_of',
 |  | 
 | 
											
												
													
														|  |        ),
 |  |        ),
 | 
											
												
													
														|  |      );
 |  |      );
 | 
											
												
													
														|  |    }
 |  |    }
 | 
											
										
											
												
													
														|  | @@ -538,7 +529,6 @@ function tripal_chado_bundle_create_fields_linker(&$info, $details, $entity_type
 | 
											
												
													
														|  |        'settings' => array(
 |  |        'settings' => array(
 | 
											
												
													
														|  |          'chado_table' => $genotype_table,
 |  |          'chado_table' => $genotype_table,
 | 
											
												
													
														|  |          'chado_column' => $pkey,
 |  |          'chado_column' => $pkey,
 | 
											
												
													
														|  | -        'semantic_web' => 'SO:0001027',
 |  | 
 | 
											
												
													
														|  |          'base_table' => $table_name,
 |  |          'base_table' => $table_name,
 | 
											
												
													
														|  |        ),
 |  |        ),
 | 
											
												
													
														|  |      );
 |  |      );
 | 
											
										
											
												
													
														|  | @@ -563,7 +553,6 @@ function tripal_chado_bundle_create_fields_linker(&$info, $details, $entity_type
 | 
											
												
													
														|  |          'chado_table' => $phenotype_table,
 |  |          'chado_table' => $phenotype_table,
 | 
											
												
													
														|  |          'chado_column' => $pkey,
 |  |          'chado_column' => $pkey,
 | 
											
												
													
														|  |          'base_table' => $table_name,
 |  |          'base_table' => $table_name,
 | 
											
												
													
														|  | -        'semantic_web' => 'SBO:0000358',
 |  | 
 | 
											
												
													
														|  |        ),
 |  |        ),
 | 
											
												
													
														|  |      );
 |  |      );
 | 
											
												
													
														|  |    }
 |  |    }
 | 
											
										
											
												
													
														|  | @@ -606,7 +595,6 @@ function tripal_chado_bundle_create_fields_linker(&$info, $details, $entity_type
 | 
											
												
													
														|  |          'chado_table' => $pub_table,
 |  |          'chado_table' => $pub_table,
 | 
											
												
													
														|  |          'chado_column' => $pkey,
 |  |          'chado_column' => $pkey,
 | 
											
												
													
														|  |          'base_table' => $table_name,
 |  |          'base_table' => $table_name,
 | 
											
												
													
														|  | -        'semantic_web' => 'schema:publication',
 |  | 
 | 
											
												
													
														|  |        ),
 |  |        ),
 | 
											
												
													
														|  |      );
 |  |      );
 | 
											
												
													
														|  |    }
 |  |    }
 | 
											
										
											
												
													
														|  | @@ -631,7 +619,6 @@ function tripal_chado_bundle_create_fields_linker(&$info, $details, $entity_type
 | 
											
												
													
														|  |          'chado_table' => $rel_table,
 |  |          'chado_table' => $rel_table,
 | 
											
												
													
														|  |          'chado_column' => $pkey,
 |  |          'chado_column' => $pkey,
 | 
											
												
													
														|  |          'base_table' => $table_name,
 |  |          'base_table' => $table_name,
 | 
											
												
													
														|  | -        'semantic_web' => 'SBO:0000374',
 |  | 
 | 
											
												
													
														|  |        ),
 |  |        ),
 | 
											
												
													
														|  |      );
 |  |      );
 | 
											
												
													
														|  |    }
 |  |    }
 | 
											
										
											
												
													
														|  | @@ -655,7 +642,6 @@ function tripal_chado_bundle_create_fields_linker(&$info, $details, $entity_type
 | 
											
												
													
														|  |          'chado_table' => $syn_table,
 |  |          'chado_table' => $syn_table,
 | 
											
												
													
														|  |          'chado_column' => $pkey,
 |  |          'chado_column' => $pkey,
 | 
											
												
													
														|  |          'base_table' => $table_name,
 |  |          'base_table' => $table_name,
 | 
											
												
													
														|  | -        'semantic_web' => 'schema:alternateName',
 |  | 
 | 
											
												
													
														|  |        ),
 |  |        ),
 | 
											
												
													
														|  |      );
 |  |      );
 | 
											
												
													
														|  |    }
 |  |    }
 | 
											
										
											
												
													
														|  | @@ -1144,7 +1130,7 @@ function tripal_chado_bundle_create_instances_linker(&$info, $entity_type, $bund
 | 
											
												
													
														|  |        'description' => 'Associates an indviddual or organization with this record',
 |  |        'description' => 'Associates an indviddual or organization with this record',
 | 
											
												
													
														|  |        'required' => FALSE,
 |  |        'required' => FALSE,
 | 
											
												
													
														|  |        'settings' => array(
 |  |        'settings' => array(
 | 
											
												
													
														|  | -        'auto_attach' => TRUE,
 |  | 
 | 
											
												
													
														|  | 
 |  | +        'auto_attach' => FALSE,
 | 
											
												
													
														|  |        ),
 |  |        ),
 | 
											
												
													
														|  |        'widget' => array(
 |  |        'widget' => array(
 | 
											
												
													
														|  |          'type' => 'local__contact_widget',
 |  |          'type' => 'local__contact_widget',
 |