 Stephen Ficklin
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0781d162e5
Fix to GFF loader
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8 years ago |
 Anthony Bretaudeau
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38b36aa2b6
fix wrong landmark and strand for proteins
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8 years ago |
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Anthony Bretaudeau
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f7cd85c2f8
fix 'Illegal string offset' line 768
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8 years ago |
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Anthony Bretaudeau
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32ada67f23
keep in cache landmarks already seen
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8 years ago |
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Anthony Bretaudeau
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6e666058bb
typo
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8 years ago |
 Lacey Sanderson
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9ed3b6ddc6
Cleaned up the gff3 import form grouping things into advanced options.
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8 years ago |
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Anthony Bretaudeau
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8832745297
code style
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8 years ago |
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Anthony Bretaudeau
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16c120e2da
code style
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8 years ago |
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Anthony Bretaudeau
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6d6e81a4f0
keep name unchanged
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8 years ago |
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Anthony Bretaudeau
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23e075f216
reorder args
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8 years ago |
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Anthony Bretaudeau
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d664e90ab0
Customize auto-created protein names with regex
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8 years ago |
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Stephen Ficklin
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f5d965b420
Fixed bug in OBO loader when https:// is used for the remote file
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9 years ago |
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Stephen Ficklin
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9dee16a212
Added error checking to GFF loader
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9 years ago |
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Stephen Ficklin
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2c19537660
Added error checking to GFF loader
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9 years ago |
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Stephen Ficklin
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07dfd16334
Changed GFF/Fasta loaders to use sequence ontology relationships rather than relationship ontology relationships. this is more consistent between the two and is a temporary fix with issue in the new relationship ontology
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9 years ago |
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Stephen Ficklin
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99f5b77330
Fixed bug in GFF loader with storing temp CDS features. Also updated tempalate to improve readability of english sentences constructed from relationships
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10 years ago |
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Stephen Ficklin
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4c3219b361
Fixed issue #2213335
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10 years ago |
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Stephen Ficklin
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80b9efb84e
Added API functions for inserting Bulk loaders. Also fixed bulk loader so it imports and exports JSON format strings. It also is backwards compatible (needs to be removed eventually) for loading serialized PHP and stringified PHP arrays. The Tripal Extensions Import admin page only supports import of JSON strings for security purposes
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10 years ago |
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Stephen Ficklin
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deb9d0059f
Improved admin delete feature interface, added API for analysis select options, updated GFF to add proteins if not in GFF, fixed a few bugs
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10 years ago |
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Ficklin
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64b9e7e33c
Fixed issue #1939938. Unique ID should now always be unique even if two features have the same name
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10 years ago |
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Ficklin
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51218fc64e
Fixed memory leak in GFF loader
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10 years ago |
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Stephen Ficklin
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8f788a8ae1
Fixed request to trim the dbxref if there is a space in it (e.g. Flybase: Fbgn98787) during GFF loading
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10 years ago |
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Stephen Ficklin
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2a3fd7a20e
minor adjustements
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10 years ago |
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Stephen Ficklin
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3b63f9bf10
Fixed bug in OBO loader where synonmys weren't being added. Fixed calls to older API calls, and minor text changes
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10 years ago |
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Lacey Sanderson
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d7e312dfa4
API Update: updated all modules to use the CV API
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10 years ago |
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Lacey Sanderson
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a36e57753a
Removing CORE Deprecated functions
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10 years ago |
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Stephen Ficklin
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a3bffb048a
Added backwards compatibility support for field_resource_* CCK fields
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11 years ago |
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Stephen Ficklin
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ac4f1545e5
Fixed bug with stock config reseting default vocabs and added documentation to GFF loader function
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11 years ago |
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Stephen Ficklin
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33268e12d6
Commenting the GFF loader function
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11 years ago |
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Stephen Ficklin
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5e82fb32e8
Fixed issues with re-setting Feature URLs and node languages. Also started to fix same for stocks but can't create a stock... need to debug that
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11 years ago |
