 spficklin
|
09b02611ed
Fixed memory leaks in the Tripal core API when storing the persistent connection. Alos fixed memory leaks in GFF loader and added loading of FASTA sequences embeded in the GFF file ##FASTA section
|
12 years ago |
|
spficklin
|
31221a7dc5
One more fix to the chado_query regular expressions to handle nested select statements where the FROM doesn't have a table but a nested statement
|
12 years ago |
|
spficklin
|
7a8f7da935
One more fix to the chado_query regular expressions to handle nested select statements where the FROM doesn't have a table but a nested statement
|
12 years ago |
|
spficklin
|
48631d702c
Fixed a bug when registering a new analysis module. If the module already existed in the table it threw an error. Now it checks first. Also fixed bug with chado_query to not add a 'chado.' prefix in the 'substring' psql function. Also updated the tripal_core_chado_update module to return the primary key if a single record is updated and if the return_record option is given.
|
12 years ago |
 Lacey Sanderson
|
9ea011d881
Added tripal_core_chado_clear_prepared function to clear previously prepared statements. Also changed chado. prefixing in chado query to only apply if there isn't already a prefix added.
|
12 years ago |
|
spficklin
|
2ba111dac2
Oops should have put the code to add the chado schema to the SQL in a differnet place in the chado_query function.
|
12 years ago |
|
spficklin
|
6060c25204
Addressed issue #1787390. The chado_query function now uses regular expressions to change an SQL statement to prefix table names with the chado schema but only does so if Chado is not local
|
12 years ago |
|
spficklin
|
0b674f6e64
Removed old relationship aggregator table and code. We don't use it.
|
12 years ago |
|
spficklin
|
bd92f8335a
Merge branch '6.x-1.x' of git.drupal.org:sandbox/spficklin/1337878 into 6.x-1.x
|
12 years ago |
|
spficklin
|
403d2803cf
Fixed issue #1661530
|
12 years ago |
|
Lacey Sanderson
|
538fa53d05
Merge branch '6.x-1.x' of git.drupal.org:sandbox/spficklin/1337878 into 6.x-1.x
|
12 years ago |
|
Lacey Sanderson
|
f148723b13
Issue #1840808: Fixed update in bulk loader. Now it checks to see if the record is pre-existing before an update. Also fixed the tripal_core_chado_update function to return the created record w/ primary key like the insert function does.
|
12 years ago |
|
spficklin
|
9bb94c3748
Fixed issue #1699022. Took out all code that tried to distinguish a revision.
|
12 years ago |
|
spficklin
|
f5204888f4
Addressed issue #1850226. Added a check to makesure that if a feature was being updated through a match on the name and it had a new uniquename, that it wouldn't conflict with an existing feature of the same uniquename. Also cleaned up some of the error messages and added some more problem checking
|
12 years ago |
|
spficklin
|
d702ccbc99
Bug fix with GFF loader
|
12 years ago |
|
spficklin
|
7c95f3d958
Fixed Issue #1809994. The FASTA loader now correctly loads relationships and external DB referneces. Also, removed the requirement that residues have only IUPAC characters. The check incorrectly forgot protein characters, but also sometimes there may be additional characters and we shouldn't limit the field
|
12 years ago |
|
spficklin
|
fe13e2e1d6
Added function to stocks admin configuration for cleaning up orphaned stocks
|
12 years ago |
|
spficklin
|
ca9bbddea1
Fixed bug with ampersand in function call
|
12 years ago |
|
spficklin
|
fa51734b3a
Fixed issue #1883500. MViews will not be dropped if only changes to the SQL, MView name or other non structural values are changed.
|
12 years ago |
|
spficklin
|
5fc6eb8f2d
Oops forgot to add tripal_cv_admin.inc to the includes list
|
12 years ago |
|
spficklin
|
332b6b104f
Fixed some typos
|
12 years ago |
|
spficklin
|
42fe28540f
Fixed issue #1712422. Changed all Chado querie to use chado_query() rather than db_query()
|
12 years ago |
|
spficklin
|
160a2559b9
Fixed issue #1780142 by providing better error messages for creating/editing custom tables and also better checks if a table name already exists
|
12 years ago |
|
spficklin
|
e5d5b7c0ca
Fixed support for AHAH. Fixed issue #1879354 by adding an 'accession' field to the add CV term form. Also fixed support for AHAH forms and altered the cv term add/edit to use the Tripal API
|
12 years ago |
|
spficklin
|
db9625a944
Renamed 'Traditional Views' to 'Legacy Views' in the Mviews setup page. Also added schema to the MViews view page and made legacy views options collapsed by default when adding a new view
|
12 years ago |
|
spficklin
|
c0e1d737c9
Fixed bug 1854242. Also reorganized the tripal_stock directories to match that of other modules
|
12 years ago |
|
spficklin
|
8d85d9b204
Fixed bug 1904410. No longer does Tripal give error on install of chado if the plpgsql language is already created. Also, fixed some code which said an incompatible version of Chado was installed when no version was installed at all.
|
12 years ago |
|
spficklin
|
15866040bc
Fixed bug 1896914. Tripal will now disallow creation or update of analysis with the same name or unique constraint as another.
|
12 years ago |
|
spficklin
|
e72aea0d18
Added ability to extract sequences by genus and specieswq!
|
12 years ago |
|
spficklin
|
c2c9fbbd0c
Just some formatting changes
|
12 years ago |
