 Lacey Sanderson
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0b75ae0055
Tweaked Tripal Menus and added help/configure links for Core, CV, DB, Organism, Analysis and Views
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 spficklin
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4dfd3d859b
Continued coversion of analysis, organism, project and feature modules
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spficklin
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d922b7a57b
Fixed minor coding review problems
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spficklin
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69e0f8271f
Merge branch '6.x-1.x' into 7.x-2.x
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 chunhuaicheng
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03bd4c9549
Fixed bug that analysisprop gets deleted when updating an analysis
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spficklin
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fd50eb23b8
continued upgrading
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spficklin
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8a898014b8
Renamed branch from 7.x-1.x to 7.x-2.x. Also merged bug fixes from 6.x-1.x
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spficklin
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98edb56e8d
Fixed bug in permissions for all modules that create node types. When testing if a node type should be created the function should always return true if the permission is set
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spficklin
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a94ec98cc0
Removed interface for properties, relationships, etc. for features. and fixed bug in inserting analysis properties
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spficklin
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9d7bf94295
Changed chado_get_id_for_node API call to accept nid as second parameter and fixed all calls in all modules. Organism module can now sync, edit, upload image for an organism
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%!s(int64=11) %!d(string=hai) anos |
 Chun-Huai Cheng
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d652032c4e
Add analysisprop to the theme
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%!s(int64=11) %!d(string=hai) anos |
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Chun-Huai Cheng
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004b5890ef
Add to the analysis form for creating/editing analysisprop
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spficklin
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0c7d49356f
Started branch for adding properties to the analysis module
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%!s(int64=11) %!d(string=hai) anos |
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spficklin
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33ef81457a
Started adding code for analysis proprties, but then commented out because didn't have time to finish. Also, updated the tripal pub obo
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%!s(int64=11) %!d(string=hai) anos |
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spficklin
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ed0dad3cf7
Provided some code clenup for the analysis module, added new API functions to the tripal_feature module, and added new case checking to some of the API calls in the Tripal core
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spficklin
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c423725e2a
Updated Doxygen comments
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spficklin
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fb42852fa2
Reorganization of functions into api, includes and theme files to make all modules consistent
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spficklin
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48631d702c
Fixed a bug when registering a new analysis module. If the module already existed in the table it threw an error. Now it checks first. Also fixed bug with chado_query to not add a 'chado.' prefix in the 'substring' psql function. Also updated the tripal_core_chado_update module to return the primary key if a single record is updated and if the return_record option is given.
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spficklin
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403d2803cf
Fixed issue #1661530
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spficklin
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42fe28540f
Fixed issue #1712422. Changed all Chado querie to use chado_query() rather than db_query()
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spficklin
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15866040bc
Fixed bug 1896914. Tripal will now disallow creation or update of analysis with the same name or unique constraint as another.
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spficklin
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bce50f164a
Fixed bug with drupal_eval and tripal_core_exclude_type_by_default hook. If a quote was present in the string being evaluated it would create errors
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spficklin
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073b43e3e4
Added additional instructions to analysis form. Fixed typo in feature module
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spficklin
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cd87d5a56a
Fixed Drupal formatting standards
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spficklin
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2840b98e85
All node types (except stock) have a function to cleanup orphaned nodes but it wasn't complete for some. A new core API function was created that all modules with node types can use to clean up orphaned nodes. Also, the drush trpjob-run command was fixed so that a username must be provided to run the job
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spficklin
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3a75d7689b
Added a new analyses resource item for features. It lists the analysis a feature is a part of
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spficklin
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67b3d34903
Don't remember what was changed in CV.api.in, but made a change to insert form for an analysis
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spficklin
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38daa52d75
Re-arranged file structure for tripal_analysis and tripal_cv. Also fixed but in tripal core
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spficklin
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3052f89e6d
Removed functionality to submit a job to reset feature permisssion on analysis node. This should be in the configuration settings to be consistent
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spficklin
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e46de073f3
Removed unused code from analysis module related to taxonomy and reindexing. We may want to put those back but for now they aren't being used.
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