 Stephen Ficklin
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0e3218057d
Fixed a few bugs in the loader
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%!s(int64=6) %!d(string=hai) anos |
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Stephen Ficklin
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c8dd07b801
OBO Loader all functions complete. Restored chado_insert_cvterm
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%!s(int64=6) %!d(string=hai) anos |
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Stephen Ficklin
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dbe2f223a2
periodic checkin
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%!s(int64=6) %!d(string=hai) anos |
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Stephen Ficklin
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5f38be9175
periodic checking
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%!s(int64=6) %!d(string=hai) anos |
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Stephen Ficklin
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e8ef524896
periodic checkin
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%!s(int64=6) %!d(string=hai) anos |
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Stephen Ficklin
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19efaf5f57
improved exceptio message
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%!s(int64=6) %!d(string=hai) anos |
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Stephen Ficklin
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678409551d
Adjusted defaultcv and defaultdb
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%!s(int64=6) %!d(string=hai) anos |
 Shawna Spoor
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f6586cdf7f
update to fix a flipped term name and id
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%!s(int64=6) %!d(string=hai) anos |
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Shawna Spoor
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f059c52de7
fixed the error reporting when trying to write to the obo temp table
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%!s(int64=6) %!d(string=hai) anos |
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Shawna Spoor
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29e3c37716
fix for the double colon issue and an update to speed up processing by writing terms to the tripalobotemp table that have been looked up remotely
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%!s(int64=6) %!d(string=hai) anos |
 Bradford Condon
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af332e12a8
fix for issue 501
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%!s(int64=6) %!d(string=hai) anos |
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Shawna Spoor
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f475a74a00
warning message of slow load when lookups required
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%!s(int64=7) %!d(string=hai) anos |
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Shawna Spoor
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2ea7e8eb8d
one last fix to address the random null name exceptions that were getting thrown by the plant trait ontology
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%!s(int64=7) %!d(string=hai) anos |
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Shawna Spoor
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87fd46f30c
still testing this fix to see if it address the slow load time
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%!s(int64=7) %!d(string=hai) anos |
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Shawna Spoor
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c8a0e23284
fix for the tripal contact obo that addresses problem on my local
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%!s(int64=7) %!d(string=hai) anos |
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Shawna Spoor
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a4514e1f9a
this updated loader has loaded the plant trait ontology the GO and the plana ontology
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%!s(int64=7) %!d(string=hai) anos |
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Shawna Spoor
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3a4fd90d77
functional lookup in ebi for term ids passed as names and is_a but still not working for plant trait ontology because of odd is_a implementation within it
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%!s(int64=7) %!d(string=hai) anos |
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Shawna Spoor
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1a35508841
adding the test for the id being a reference and handling appropriately
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%!s(int64=7) %!d(string=hai) anos |
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Shawna Spoor
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9096723c9a
found deprecated terms that needed to be swapped out
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%!s(int64=7) %!d(string=hai) anos |
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Shawna Spoor
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d4ccef15fc
changes to bring the tripal chado api module files into naming standards setout in ticket 330
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%!s(int64=7) %!d(string=hai) anos |
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Shawna Spoor
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a4caea07f8
one last note to self I had left in needed to come out
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%!s(int64=7) %!d(string=hai) anos |
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Shawna Spoor
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ca9d2aaaa8
removing a missed debug statement
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%!s(int64=7) %!d(string=hai) anos |
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Shawna Spoor
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10c1c605e9
changes to cvtermpathupdate to allow for goslim to load and an update to the oboebi lookup functionality so that edam does not cause a problem and one small change to a tripal drush command to apply permissions to content types
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%!s(int64=7) %!d(string=hai) anos |
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Shawna Spoor
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b709b1739c
moved the check of the cv from parse to processterm because it makes more sense there
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%!s(int64=7) %!d(string=hai) anos |
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Shawna Spoor
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fe6ff8809c
fixed the errors and closed an unclosed open file stream
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%!s(int64=7) %!d(string=hai) anos |
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Shawna Spoor
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e570ab3b51
initial commit with ebi lookup for terms
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%!s(int64=7) %!d(string=hai) anos |
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Shawna Spoor
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bda156ab24
added the ebi ontology search call for the load if no default namespace is provided moving on to the loading of terms and typedefs now.
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%!s(int64=7) %!d(string=hai) anos |
 dsenalik
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76f04f941d
Fix minor typos 2
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%!s(int64=7) %!d(string=hai) anos |
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Stephen Ficklin
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54e848aee5
Clean-ed up the cv/lookup and added a simple tree browser that could use some improvement
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%!s(int64=7) %!d(string=hai) anos |
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Shawna Spoor
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69479178c9
initial commit with fixes to the obo loader to allow for file references
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%!s(int64=7) %!d(string=hai) anos |
