 Stephen Ficklin
|
0e3218057d
Fixed a few bugs in the loader
|
пре 6 година |
|
Stephen Ficklin
|
c8dd07b801
OBO Loader all functions complete. Restored chado_insert_cvterm
|
пре 6 година |
|
Stephen Ficklin
|
dbe2f223a2
periodic checkin
|
пре 6 година |
|
Stephen Ficklin
|
5f38be9175
periodic checking
|
пре 6 година |
|
Stephen Ficklin
|
e8ef524896
periodic checkin
|
пре 6 година |
|
Stephen Ficklin
|
19efaf5f57
improved exceptio message
|
пре 6 година |
|
Stephen Ficklin
|
678409551d
Adjusted defaultcv and defaultdb
|
пре 6 година |
 Shawna Spoor
|
f6586cdf7f
update to fix a flipped term name and id
|
пре 6 година |
|
Shawna Spoor
|
f059c52de7
fixed the error reporting when trying to write to the obo temp table
|
пре 6 година |
|
Shawna Spoor
|
29e3c37716
fix for the double colon issue and an update to speed up processing by writing terms to the tripalobotemp table that have been looked up remotely
|
пре 6 година |
 Bradford Condon
|
af332e12a8
fix for issue 501
|
пре 6 година |
|
Shawna Spoor
|
f475a74a00
warning message of slow load when lookups required
|
пре 7 година |
|
Shawna Spoor
|
2ea7e8eb8d
one last fix to address the random null name exceptions that were getting thrown by the plant trait ontology
|
пре 7 година |
|
Shawna Spoor
|
87fd46f30c
still testing this fix to see if it address the slow load time
|
пре 7 година |
|
Shawna Spoor
|
c8a0e23284
fix for the tripal contact obo that addresses problem on my local
|
пре 7 година |
|
Shawna Spoor
|
a4514e1f9a
this updated loader has loaded the plant trait ontology the GO and the plana ontology
|
пре 7 година |
|
Shawna Spoor
|
3a4fd90d77
functional lookup in ebi for term ids passed as names and is_a but still not working for plant trait ontology because of odd is_a implementation within it
|
пре 7 година |
|
Shawna Spoor
|
1a35508841
adding the test for the id being a reference and handling appropriately
|
пре 7 година |
|
Shawna Spoor
|
9096723c9a
found deprecated terms that needed to be swapped out
|
пре 7 година |
|
Shawna Spoor
|
d4ccef15fc
changes to bring the tripal chado api module files into naming standards setout in ticket 330
|
пре 7 година |
|
Shawna Spoor
|
a4caea07f8
one last note to self I had left in needed to come out
|
пре 7 година |
|
Shawna Spoor
|
ca9d2aaaa8
removing a missed debug statement
|
пре 7 година |
|
Shawna Spoor
|
10c1c605e9
changes to cvtermpathupdate to allow for goslim to load and an update to the oboebi lookup functionality so that edam does not cause a problem and one small change to a tripal drush command to apply permissions to content types
|
пре 7 година |
|
Shawna Spoor
|
b709b1739c
moved the check of the cv from parse to processterm because it makes more sense there
|
пре 7 година |
|
Shawna Spoor
|
fe6ff8809c
fixed the errors and closed an unclosed open file stream
|
пре 7 година |
|
Shawna Spoor
|
e570ab3b51
initial commit with ebi lookup for terms
|
пре 7 година |
|
Shawna Spoor
|
bda156ab24
added the ebi ontology search call for the load if no default namespace is provided moving on to the loading of terms and typedefs now.
|
пре 7 година |
 dsenalik
|
76f04f941d
Fix minor typos 2
|
пре 7 година |
|
Stephen Ficklin
|
54e848aee5
Clean-ed up the cv/lookup and added a simple tree browser that could use some improvement
|
пре 7 година |
|
Shawna Spoor
|
69479178c9
initial commit with fixes to the obo loader to allow for file references
|
пре 7 година |
