 Risharde Ramnath
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9035086bfe
Fixed tests that were affected by tag and value checks that have now been removed
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3 éve |
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Risharde Ramnath
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5da8b12b88
Unit test - alias/synonym attribute verification
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3 éve |
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Risharde Ramnath
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cbf205fced
Unit test - parent verification
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3 éve |
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Risharde Ramnath
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ac790a4eeb
Unit test for escaped characters with tag values
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3 éve |
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Risharde Ramnath
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5260a06a06
This latest commit detects a bug using the testGFFImporterEscapedTagValueWithComma unit test
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3 éve |
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Risharde Ramnath
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085cf9eabd
Tag value unit test added
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3 éve |
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Risharde Ramnath
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2f66751d03
2 validation checks for attribute tag name and attribute tag value plus unit test for tag name that contains a comma
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3 éve |
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Risharde Ramnath
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bba096323a
Fixed a mix up of validation for ID which should have been for seqid. Removed validation for ID. Altered tests to properly work. Added new test for invalid character in seqid/landmark id
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3 éve |
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Risharde Ramnath
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5278d2a50b
Fix for GFF if phase value is invalid + unit tests for the gff phase column that checks for valid and invalid characters
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3 éve |
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Risharde Ramnath
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d25737f6e4
GFF loader modification to throw error if strand character is invalid. Added unit test with an invalid strand gff to confirm it works.
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3 éve |
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Risharde Ramnath
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ea8b4a0b58
GFF fix for strands that are specified as question marks + finish php unit test for strands
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3 éve |
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Risharde Ramnath
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a396ae070a
Added new test to check on score values - integer, double and negative double
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3 éve |
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Risharde Ramnath
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da939901ea
Fixed ID regular expression check in GFF loader, added new test for invalid start end values and corresponding test gff file
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3 éve |
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Risharde Ramnath
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5e98649061
2 additional unit tests and corresponding gff files related to ID validations for unescaped whitespaces and IDs beginning with right arrow character
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3 éve |
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Risharde Ramnath
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baa68f391c
All unit tests now pass, added additional gff files for tests, modified a few functions to correctly do tests, removed dependency on remote files in favour of local files in the data directory for tests.
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3 éve |
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Risharde Ramnath
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b2c0291cb4
Fixed testGFFImporterAttributeFastas() test, assertion values were based on the wrong file. Updated with the correct string lengths and md5 values
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3 éve |
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Risharde Ramnath
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5f4d0f8b6a
Removed additional gap from small_gene.gff since only one gap variable is allowed per gene. Fixed the test to only look for one gap - test public function testGFFImporterAttributeProperty() {completes correctly
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3 éve |
 Peter Richter
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62e45b7146
Add unit test for GFF3Importer::loadFastas()
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4 éve |
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Peter Richter
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a392175e24
Add unit tests for GFF3Importer Attributes.
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4 éve |
 bradfordcondon
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5a8103068a
run phpstorm base style formatter
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5 éve |
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bradford.condon
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5654bda517
change landmark term
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6 éve |
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Bradford Condon
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ea94a3dd70
add test to confirm explicit proteins are still loaded
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6 éve |
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Bradford Condon
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a959af7263
fix bug loading taxonomy importer
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6 éve |
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Bradford Condon
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e6119f0ff4
change wording anddefaults of variable
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6 éve |
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Bradford Condon
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4a7174469f
reorganize tests and add loader category to readme
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6 éve |
