 Stephen Ficklin
|
086eb4b649
Fixed bug in sequence retreval API function if parent has no residues
|
11 jaren geleden |
|
Stephen Ficklin
|
0ab56cac4a
Updated defline of seq retreival API function to include genus and species of parent equence
|
11 jaren geleden |
|
Stephen Ficklin
|
1f1a1c213a
Updated seq extract with better from field descriptions
|
12 jaren geleden |
|
spficklin
|
2756a7cce1
Added brackets around all table names in SQL statements throughout all of Tripal
|
12 jaren geleden |
|
spficklin
|
ed0dad3cf7
Provided some code clenup for the analysis module, added new API functions to the tripal_feature module, and added new case checking to some of the API calls in the Tripal core
|
12 jaren geleden |
|
spficklin
|
c423725e2a
Updated Doxygen comments
|
12 jaren geleden |
|
spficklin
|
fb42852fa2
Reorganization of functions into api, includes and theme files to make all modules consistent
|
12 jaren geleden |
|
spficklin
|
b863b7fcee
Ooops type
|
12 jaren geleden |
|
spficklin
|
b6444c78ad
Debugging Tripal CV module and created API function for feature relationships
|
12 jaren geleden |
|
spficklin
|
09b02611ed
Fixed memory leaks in the Tripal core API when storing the persistent connection. Alos fixed memory leaks in GFF loader and added loading of FASTA sequences embeded in the GFF file ##FASTA section
|
12 jaren geleden |
|
spficklin
|
bce50f164a
Fixed bug with drupal_eval and tripal_core_exclude_type_by_default hook. If a quote was present in the string being evaluated it would create errors
|
12 jaren geleden |
|
spficklin
|
073b43e3e4
Added additional instructions to analysis form. Fixed typo in feature module
|
12 jaren geleden |
|
spficklin
|
cd87d5a56a
Fixed Drupal formatting standards
|
12 jaren geleden |
|
spficklin
|
7617a8ed44
Fixes to GFF loader and feature install module
|
12 jaren geleden |
|
spficklin
|
774562ff8e
Fixed several memory leask
|
12 jaren geleden |
|
Stephen Ficklin
|
226018de46
Fixed sequence formatter function & drush command
|
12 jaren geleden |
|
spficklin
|
67bca35cf9
Fixed incorrectly named function, added ability to get sequence by analysi_id in sequence retrieval drush command
|
12 jaren geleden |
|
spficklin
|
91184c553b
Fixed the get sequence function to work with Postgres 8.4 and fixed the annotated feature so that it can properly display overlapping parts and show the sequence in reverse complement if on the reverse strand
|
12 jaren geleden |
|
spficklin
|
8f64c6204a
Added a requirement that Chado must be accessible before Tripal Views gets installed
|
12 jaren geleden |
|
spficklin
|
d8f85709a8
Continuing to fix feature aggreation SQL
|
12 jaren geleden |
|
spficklin
|
f69311cda8
Fixed query that pulls flanking sequences
|
12 jaren geleden |
|
spficklin
|
9721bd0cd4
Fixed query that pulls flanking sequences
|
12 jaren geleden |
|
spficklin
|
f0ab1a8a04
Fixed for coding standards
|
12 jaren geleden |
|
spficklin
|
c2a9276bb4
Fixed minor bug in sequence output
|
12 jaren geleden |
|
spficklin
|
a9c264ba29
Fixed minor bug in sequence output
|
12 jaren geleden |
|
spficklin
|
d40033ae9d
Moved code for generating sequence out of the sequence field handler and into an API function in the fature_module. Also created a drush command for extracting sequences
|
12 jaren geleden |
|
spficklin
|
5816ad9df7
added a field and filter handler for a sequence. Also fixed a fwe butgs in the gff loader, added a new function in the feature API for generating a reverse compliment
|
12 jaren geleden |
|
spficklin
|
7b8f930310
Fixed parsing bug in GFF loader. Moved all include files into an include directory
|
12 jaren geleden |
