 spficklin
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bf802025f2
Added support for paging of chado queries, and adjusted support for genotype templates
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12 years ago |
 Lacey Sanderson
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87eb2abd14
Small bug fix to tripal_core_chado_select
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12 years ago |
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Lacey Sanderson
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c4c8473ef1
Small fix to tripal_core_chado_select -need to be able to select all results (ie: empty array)
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12 years ago |
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Lacey Sanderson
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966435e323
Fixed bug where non-sync'd content had a broken link in views by adding link to node checkbox back to the chado_views_handler_field handler. Also added an API function tripal_core_is_tripal_node_type(chado_table) to ensure this checkbox is only shown for fields from a base table that links to a drupal node. Finally updated all the default views to use this functionality.
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12 years ago |
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spficklin
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d2b7b59b9e
Fixed issues with the library module
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12 years ago |
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spficklin
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cf8e652b36
Fixed GFF loader for deleting entries in a GFF file. It was broken
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12 years ago |
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spficklin
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b6444c78ad
Debugging Tripal CV module and created API function for feature relationships
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12 years ago |
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spficklin
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66ef98e133
Fixed tripal db module to use Tripal API, adjusted the help text, validates if database name already exists before trying to add/edit. And added checks in tripal core select/insert/update/delete functions to make sure and arguments are arrays and they have values
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12 years ago |
 Lacey Sanderson
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3862b24240
Made the previous fix case insenstive so Select and select queries still get the non search_path change boost
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12 years ago |
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Lacey Sanderson
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7b009368b7
Added a fix to chado_query -we are currently only prefixing for selects so search_path changes are still needed for non-select queries
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12 years ago |
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Lacey Sanderson
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c80656fca4
Fixed Issue #1921174: used db_query instead of chado_query
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12 years ago |
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spficklin
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4560a2dce9
Made some additional bug fixes and improvements to the GFF loader
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12 years ago |
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spficklin
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09b02611ed
Fixed memory leaks in the Tripal core API when storing the persistent connection. Alos fixed memory leaks in GFF loader and added loading of FASTA sequences embeded in the GFF file ##FASTA section
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12 years ago |
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spficklin
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31221a7dc5
One more fix to the chado_query regular expressions to handle nested select statements where the FROM doesn't have a table but a nested statement
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12 years ago |
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spficklin
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7a8f7da935
One more fix to the chado_query regular expressions to handle nested select statements where the FROM doesn't have a table but a nested statement
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12 years ago |
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spficklin
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48631d702c
Fixed a bug when registering a new analysis module. If the module already existed in the table it threw an error. Now it checks first. Also fixed bug with chado_query to not add a 'chado.' prefix in the 'substring' psql function. Also updated the tripal_core_chado_update module to return the primary key if a single record is updated and if the return_record option is given.
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12 years ago |
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Lacey Sanderson
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9ea011d881
Added tripal_core_chado_clear_prepared function to clear previously prepared statements. Also changed chado. prefixing in chado query to only apply if there isn't already a prefix added.
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12 years ago |
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spficklin
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2ba111dac2
Oops should have put the code to add the chado schema to the SQL in a differnet place in the chado_query function.
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12 years ago |
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spficklin
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6060c25204
Addressed issue #1787390. The chado_query function now uses regular expressions to change an SQL statement to prefix table names with the chado schema but only does so if Chado is not local
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12 years ago |
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Lacey Sanderson
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f148723b13
Issue #1840808: Fixed update in bulk loader. Now it checks to see if the record is pre-existing before an update. Also fixed the tripal_core_chado_update function to return the created record w/ primary key like the insert function does.
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12 years ago |
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spficklin
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e5d5b7c0ca
Fixed support for AHAH. Fixed issue #1879354 by adding an 'accession' field to the add CV term form. Also fixed support for AHAH forms and altered the cv term add/edit to use the Tripal API
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12 years ago |
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spficklin
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8d85d9b204
Fixed bug 1904410. No longer does Tripal give error on install of chado if the plpgsql language is already created. Also, fixed some code which said an incompatible version of Chado was installed when no version was installed at all.
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12 years ago |
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spficklin
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c2c9fbbd0c
Just some formatting changes
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12 years ago |
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spficklin
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bce50f164a
Fixed bug with drupal_eval and tripal_core_exclude_type_by_default hook. If a quote was present in the string being evaluated it would create errors
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12 years ago |
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Lacey Sanderson
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a3c7d01319
Merge branch '6.x-dev' into 6.x-1.x
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12 years ago |
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Stephen Ficklin
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8b1c0f7555
Merged 6.x-dev
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12 years ago |
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Stephen Ficklin
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43bf50c6f5
Merge branch '6.x-dev' of git.drupal.org:sandbox/spficklin/1337878 into 6.x-dev
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12 years ago |
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Stephen Ficklin
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14a4923bdc
Fixed by Chun-huai
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12 years ago |
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Stephen Ficklin
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232ac24224
Just some reformatting of lines is all
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12 years ago |
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Stephen Ficklin
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383968617f
Added easier support for AHAH
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12 years ago |
