 spficklin
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d95e608e34
Oops forgot to take out dpm's
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vor 12 Jahren |
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spficklin
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875cddbbcb
Fixed bug where featurelocs weren't showing up if one of the two FK relationships returned NULL
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vor 12 Jahren |
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spficklin
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a52dc176d2
Fixed bug where featurelocs weren't showing up if one of the two FK relationships returned NULL
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vor 12 Jahren |
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spficklin
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2a743acf56
Made transactions optional in GFF loader. Changed all appropriate db_queryt to chado_query in feature module. Added a drush command to sync a single feature (useful for debugging/testing).
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vor 12 Jahren |
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spficklin
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87400a3502
Added hook to display args in job view
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vor 12 Jahren |
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spficklin
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6cfe5c467e
When syncing features repetitive error logs were entered into the Drupal report log for every synced feature stating that a duplicate feature could not be inserted. This was fixed
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vor 12 Jahren |
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spficklin
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2840b98e85
All node types (except stock) have a function to cleanup orphaned nodes but it wasn't complete for some. A new core API function was created that all modules with node types can use to clean up orphaned nodes. Also, the drush trpjob-run command was fixed so that a username must be provided to run the job
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vor 12 Jahren |
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spficklin
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ac7081027a
Removed the feature browser from the library and anslysis pages.
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vor 12 Jahren |
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spficklin
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138637d6eb
Fixed bug in annotated feature display
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vor 12 Jahren |
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spficklin
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91184c553b
Fixed the get sequence function to work with Postgres 8.4 and fixed the annotated feature so that it can properly display overlapping parts and show the sequence in reverse complement if on the reverse strand
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vor 12 Jahren |
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spficklin
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b4ad2e1b5d
combined object and subject relationships into a single template
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vor 12 Jahren |
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spficklin
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48f972cd1b
Bug fixes
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vor 12 Jahren |
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spficklin
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320e44d2c2
Fixed parsing bug in GFF loader. Moved all include files into an include directory
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vor 12 Jahren |
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spficklin
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7b8f930310
Fixed parsing bug in GFF loader. Moved all include files into an include directory
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vor 12 Jahren |
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spficklin
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3efbf1ed79
Fixed coding standards problems as found by the coder module
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vor 12 Jahren |
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spficklin
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1d3c11b6dd
Fixed another problem with alignments
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vor 12 Jahren |
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Stephen Ficklin
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36c67c6024
Fixed mistake in matched feature preprocess function
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vor 12 Jahren |
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spficklin
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0778b71d77
Updating main branch with fixes to feature moduel for alignments. Also fixed but in Core API
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vor 12 Jahren |
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Stephen Ficklin
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cfff5f8594
Merge branch '6.x-0.4-dev' of git.drupal.org:sandbox/spficklin/1337878 into 6.x-0.4-dev
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vor 12 Jahren |
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Stephen Ficklin
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26f611ee42
Fixed watchdog calls with wrong module name
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vor 12 Jahren |
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Stephen Ficklin
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e408d9e4a3
fixed some errors where objects were not first created
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vor 12 Jahren |
 Lacey Sanderson
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0728c08b4a
Merge branch '6.x-0.4-dev' of git.drupal.org:sandbox/spficklin/1337878 into 6.x-0.4-dev
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vor 12 Jahren |
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Lacey Sanderson
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63c8406e58
Coding Standards: Final cleanup for tripal_feature; added @coder-ignore for errors to be ignored
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vor 12 Jahren |
 Pubudu Basnayaka
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688d511b07
Tripal Feature adheres to Drupal coding standards
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vor 12 Jahren |
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Pubudu Basnayaka
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2ff2ef1ab9
Tripal Feature adheres to Drupal coding standards
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vor 12 Jahren |
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Pubudu Basnayaka
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35583d0246
Tripal Feature adheres to Drupal coding standards
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vor 12 Jahren |
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Stephen Ficklin
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21f247f98e
Added functionality to the Feature Summary Report on the organism page so that site admins can customize which terms appear in the list and rename the terms to make them more legible. By default the report behaves the same
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vor 12 Jahren |
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spficklin
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af2ff151e6
Moved most extensions out. Moved base modules out of 'base' directory
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vor 13 Jahren |
 alexgl
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c5d67e59c6
moving more modules into base and extensions respectively
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vor 13 Jahren |
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spficklin
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838e168b2f
Fixed the bug where the edit drop down box on the feature edit/create form wasn't getting populated with reasonable values.
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vor 13 Jahren |
