 Stephen Ficklin
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ba1588b397
Fixed bug where analysis was using vid to find node
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%!s(int64=12) %!d(string=hai) anos |
 Pubudu Basnayaka
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ab377e3619
Tripal Analysis adheres to Drupal coding standards
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%!s(int64=12) %!d(string=hai) anos |
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Pubudu Basnayaka
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b758b80f28
Tripal Analysis adheres to Drupal coding standards
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%!s(int64=12) %!d(string=hai) anos |
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Pubudu Basnayaka
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7de17405a8
Tripal Analysis adheres to Drupal coding standards
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%!s(int64=12) %!d(string=hai) anos |
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Pubudu Basnayaka
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fb8bf61008
Tripal analysis adheres to Drupal coding standards
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%!s(int64=12) %!d(string=hai) anos |
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Stephen Ficklin
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b8ccf71124
fixed stdClass problem
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%!s(int64=13) %!d(string=hai) anos |
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spficklin
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af2ff151e6
Moved most extensions out. Moved base modules out of 'base' directory
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%!s(int64=13) %!d(string=hai) anos |
 alexgl
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95aafcbd13
moving core modules into base
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%!s(int64=13) %!d(string=hai) anos |
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spficklin
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fb76301d42
Fixed hook_access for all modules. This change supports use of other access permission modules, such as "node privacy by role"
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%!s(int64=13) %!d(string=hai) anos |
 ccheng
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9e1584f598
Update permission checks
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%!s(int64=13) %!d(string=hai) anos |
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spficklin
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e51634c8f3
Fixed permissoins problem for compatability with the node_privacy_by_role module
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%!s(int64=13) %!d(string=hai) anos |
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ccheng
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4691cb02cf
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%!s(int64=13) %!d(string=hai) anos |
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ccheng
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5305a34059
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%!s(int64=13) %!d(string=hai) anos |
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spficklin
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7ced61cd61
Updated themeing for analyeses
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%!s(int64=14) %!d(string=hai) anos |
 laceysanderson
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ade56a6971
Tripal: Removed Old Bulk Loader (Stephen) from core module
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%!s(int64=14) %!d(string=hai) anos |
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spficklin
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051e7bd128
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%!s(int64=14) %!d(string=hai) anos |
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spficklin
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0dd8d23333
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%!s(int64=14) %!d(string=hai) anos |
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spficklin
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2b23f6c3e3
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%!s(int64=14) %!d(string=hai) anos |
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spficklin
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5e0ef6ceff
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%!s(int64=14) %!d(string=hai) anos |
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spficklin
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47dcfaa04c
Bug fixes for various modules and themes
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%!s(int64=14) %!d(string=hai) anos |
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spficklin
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5ac6843b37
Fixed bugs and some themeing, and added support for parsing query matches in the blast analysis.
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%!s(int64=14) %!d(string=hai) anos |
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ccheng
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318feef549
fix a bug that analysis_type wasn't picked up correctly when syncing.
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%!s(int64=14) %!d(string=hai) anos |
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spficklin
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05d50175b0
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%!s(int64=14) %!d(string=hai) anos |
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laceysanderson
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0f66f0150d
Added documentation to tripal_core, tripal_analysis, tripal_contact, tripal_stock for the new Doxygen API Site
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%!s(int64=14) %!d(string=hai) anos |
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spficklin
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c616bca1ea
Add analysis requirement to GFF loader
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%!s(int64=14) %!d(string=hai) anos |
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laceysanderson
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a0a61c372e
Made administration paths consistent and added module descriptions/help to new tripal admins for all modules except feature
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%!s(int64=14) %!d(string=hai) anos |
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laceysanderson
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0df9939cce
Updated tripal API to use hooks for table description and retrieve only the table description needed by calling module_invoke_all. Also added foreign key descriptions to tripal_stock.api.inc:all, tripal_cv.api.inc:cvterm, tripal_db.api.inc:dbxref, tripal_analysis.api.inc:all, tripal_feature.api.inc:feature, tripal_organism.api.inc:all, tripal_contact.api.inc:all
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%!s(int64=14) %!d(string=hai) anos |
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laceysanderson
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3cfd7ba884
Added Views Integration for tripal_analysis
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%!s(int64=14) %!d(string=hai) anos |
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spficklin
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3ab974ee52
Added a new tripal_set_active_db function to replace Drupal's set_active_db function. This function allows Tripal to use a chado database in an external location or a chado database within another schema within the Drupal database. This keeps backwards compatibility with older versions of Tripal.
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%!s(int64=14) %!d(string=hai) anos |
 mestato
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832463e97e
The syncing method now tries to figure out what type of analysis is being synchronized by checking the cvterm "analysis_type". This cvterm should be added to each analysis by the individual analysis modules or the user if the upload is directly into chado. The value for this cvterm should reflect the name of the module, "tripal_analysis_unigene", "tripal_analysis_blast", etc.
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%!s(int64=14) %!d(string=hai) anos |
