 spficklin
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6cfe5c467e
When syncing features repetitive error logs were entered into the Drupal report log for every synced feature stating that a duplicate feature could not be inserted. This was fixed
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12 gadi atpakaļ |
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spficklin
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2840b98e85
All node types (except stock) have a function to cleanup orphaned nodes but it wasn't complete for some. A new core API function was created that all modules with node types can use to clean up orphaned nodes. Also, the drush trpjob-run command was fixed so that a username must be provided to run the job
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12 gadi atpakaļ |
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spficklin
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ac7081027a
Removed the feature browser from the library and anslysis pages.
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12 gadi atpakaļ |
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spficklin
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138637d6eb
Fixed bug in annotated feature display
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12 gadi atpakaļ |
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spficklin
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91184c553b
Fixed the get sequence function to work with Postgres 8.4 and fixed the annotated feature so that it can properly display overlapping parts and show the sequence in reverse complement if on the reverse strand
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12 gadi atpakaļ |
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spficklin
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b4ad2e1b5d
combined object and subject relationships into a single template
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12 gadi atpakaļ |
|
spficklin
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48f972cd1b
Bug fixes
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12 gadi atpakaļ |
|
spficklin
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320e44d2c2
Fixed parsing bug in GFF loader. Moved all include files into an include directory
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12 gadi atpakaļ |
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spficklin
|
7b8f930310
Fixed parsing bug in GFF loader. Moved all include files into an include directory
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12 gadi atpakaļ |
|
spficklin
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3efbf1ed79
Fixed coding standards problems as found by the coder module
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12 gadi atpakaļ |
|
spficklin
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1d3c11b6dd
Fixed another problem with alignments
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12 gadi atpakaļ |
|
Stephen Ficklin
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36c67c6024
Fixed mistake in matched feature preprocess function
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12 gadi atpakaļ |
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spficklin
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0778b71d77
Updating main branch with fixes to feature moduel for alignments. Also fixed but in Core API
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12 gadi atpakaļ |
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Stephen Ficklin
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cfff5f8594
Merge branch '6.x-0.4-dev' of git.drupal.org:sandbox/spficklin/1337878 into 6.x-0.4-dev
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12 gadi atpakaļ |
|
Stephen Ficklin
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26f611ee42
Fixed watchdog calls with wrong module name
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12 gadi atpakaļ |
|
Stephen Ficklin
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e408d9e4a3
fixed some errors where objects were not first created
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12 gadi atpakaļ |
 Lacey Sanderson
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0728c08b4a
Merge branch '6.x-0.4-dev' of git.drupal.org:sandbox/spficklin/1337878 into 6.x-0.4-dev
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12 gadi atpakaļ |
|
Lacey Sanderson
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63c8406e58
Coding Standards: Final cleanup for tripal_feature; added @coder-ignore for errors to be ignored
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12 gadi atpakaļ |
 Pubudu Basnayaka
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688d511b07
Tripal Feature adheres to Drupal coding standards
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12 gadi atpakaļ |
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Pubudu Basnayaka
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2ff2ef1ab9
Tripal Feature adheres to Drupal coding standards
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12 gadi atpakaļ |
|
Pubudu Basnayaka
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35583d0246
Tripal Feature adheres to Drupal coding standards
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12 gadi atpakaļ |
|
Stephen Ficklin
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21f247f98e
Added functionality to the Feature Summary Report on the organism page so that site admins can customize which terms appear in the list and rename the terms to make them more legible. By default the report behaves the same
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12 gadi atpakaļ |
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spficklin
|
af2ff151e6
Moved most extensions out. Moved base modules out of 'base' directory
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13 gadi atpakaļ |
 alexgl
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c5d67e59c6
moving more modules into base and extensions respectively
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13 gadi atpakaļ |
|
spficklin
|
838e168b2f
Fixed the bug where the edit drop down box on the feature edit/create form wasn't getting populated with reasonable values.
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13 gadi atpakaļ |
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spficklin
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27a3268743
Temporary fix for populating the feature type drop down when editing a feature. It wasn't getting populated.
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13 gadi atpakaļ |
|
laceysanderson
|
b645703ffc
Tripal: Bug Fix to feature coloured sequence code (tripal_feature.module Ln1300)
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13 gadi atpakaļ |
 ccheng
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9e1584f598
Update permission checks
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13 gadi atpakaļ |
|
ccheng
|
3b01863505
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13 gadi atpakaļ |
|
spficklin
|
7ea86c8786
Fixed FASTA loader, had several bugs and updated the alignment template
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13 gadi atpakaļ |
