 spficklin
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455f096346
fixed merge conflicts
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spficklin
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7269960a32
Set paths for theme templates
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 Lacey Sanderson
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6b3cf60a8f
Small Bug Fixes: undefined index views integration description and undefined constant BLOCK_NO_CACHE errors
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spficklin
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53b9506b4e
Preliminary commit of converted tripal_library module
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Lacey Sanderson
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0b75ae0055
Tweaked Tripal Menus and added help/configure links for Core, CV, DB, Organism, Analysis and Views
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spficklin
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4dfd3d859b
Continued coversion of analysis, organism, project and feature modules
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spficklin
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d922b7a57b
Fixed minor coding review problems
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spficklin
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8a898014b8
Renamed branch from 7.x-1.x to 7.x-2.x. Also merged bug fixes from 6.x-1.x
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spficklin
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9d7bf94295
Changed chado_get_id_for_node API call to accept nid as second parameter and fixed all calls in all modules. Organism module can now sync, edit, upload image for an organism
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spficklin
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55d6ec58ba
Start converting tripal_core from 6.x to 7.x
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spficklin
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4622aa3c46
Fixed bug with syncing organisms
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spficklin
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b405ae3afb
Continued development of Contact and Publiation modules
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Lacey Sanderson
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fca91cc322
Added more doxygen commenting -there wasn't any groups for the bulk loader or tripal views
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spficklin
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7547efd269
Changed directory structure of organism module to match the others. Added an admin.inc and a new theme directory and an api directory.
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spficklin
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128443c86a
Cleaned up featuremap module. Added unittype_id to form and created cvterms for the unit types
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spficklin
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9bb94c3748
Fixed issue #1699022. Took out all code that tried to distinguish a revision.
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spficklin
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42fe28540f
Fixed issue #1712422. Changed all Chado querie to use chado_query() rather than db_query()
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spficklin
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2fd046eebd
Forgot tripal_organism_teaser in theme
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spficklin
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cd87d5a56a
Fixed Drupal formatting standards
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Stephen Ficklin
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a28f785f25
Had to rollback a fix that removed memory leaks, but it casued other problems
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spficklin
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2840b98e85
All node types (except stock) have a function to cleanup orphaned nodes but it wasn't complete for some. A new core API function was created that all modules with node types can use to clean up orphaned nodes. Also, the drush trpjob-run command was fixed so that a username must be provided to run the job
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spficklin
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c324a8440f
Merged in 6.x-6233304-Support_for_Chado_v1.2 branch and removed non-views stocks page
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spficklin
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06ed7b835c
Removed old organism and analyses lists as this duplicates are default views and views is easy enough to install if someone wants the list
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spficklin
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bc6d1b4c41
Fixed revisions in update
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Stephen Ficklin
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1dae1ea23a
Revisions weren't working properly for organisms. Fixed it
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 Pubudu Basnayaka
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aaed62d7f5
Tripal Organism adheres to Drupal coding standards
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Pubudu Basnayaka
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e6e051e53d
Tripal Organism now adhere to Drupal coding standards
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spficklin
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af2ff151e6
Moved most extensions out. Moved base modules out of 'base' directory
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 alexgl
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c5d67e59c6
moving more modules into base and extensions respectively
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spficklin
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fb76301d42
Fixed hook_access for all modules. This change supports use of other access permission modules, such as "node privacy by role"
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