 spficklin
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ed0dad3cf7
Provided some code clenup for the analysis module, added new API functions to the tripal_feature module, and added new case checking to some of the API calls in the Tripal core
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12 lat temu |
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spficklin
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c423725e2a
Updated Doxygen comments
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12 lat temu |
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spficklin
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fb42852fa2
Reorganization of functions into api, includes and theme files to make all modules consistent
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12 lat temu |
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spficklin
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b863b7fcee
Ooops type
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12 lat temu |
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spficklin
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b6444c78ad
Debugging Tripal CV module and created API function for feature relationships
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12 lat temu |
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spficklin
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09b02611ed
Fixed memory leaks in the Tripal core API when storing the persistent connection. Alos fixed memory leaks in GFF loader and added loading of FASTA sequences embeded in the GFF file ##FASTA section
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12 lat temu |
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spficklin
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bce50f164a
Fixed bug with drupal_eval and tripal_core_exclude_type_by_default hook. If a quote was present in the string being evaluated it would create errors
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12 lat temu |
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spficklin
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073b43e3e4
Added additional instructions to analysis form. Fixed typo in feature module
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12 lat temu |
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spficklin
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cd87d5a56a
Fixed Drupal formatting standards
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12 lat temu |
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spficklin
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7617a8ed44
Fixes to GFF loader and feature install module
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12 lat temu |
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spficklin
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774562ff8e
Fixed several memory leask
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12 lat temu |
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Stephen Ficklin
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226018de46
Fixed sequence formatter function & drush command
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12 lat temu |
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spficklin
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67bca35cf9
Fixed incorrectly named function, added ability to get sequence by analysi_id in sequence retrieval drush command
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12 lat temu |
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spficklin
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91184c553b
Fixed the get sequence function to work with Postgres 8.4 and fixed the annotated feature so that it can properly display overlapping parts and show the sequence in reverse complement if on the reverse strand
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12 lat temu |
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spficklin
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8f64c6204a
Added a requirement that Chado must be accessible before Tripal Views gets installed
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12 lat temu |
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spficklin
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d8f85709a8
Continuing to fix feature aggreation SQL
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12 lat temu |
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spficklin
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f69311cda8
Fixed query that pulls flanking sequences
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12 lat temu |
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spficklin
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9721bd0cd4
Fixed query that pulls flanking sequences
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12 lat temu |
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spficklin
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f0ab1a8a04
Fixed for coding standards
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12 lat temu |
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spficklin
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c2a9276bb4
Fixed minor bug in sequence output
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12 lat temu |
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spficklin
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a9c264ba29
Fixed minor bug in sequence output
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12 lat temu |
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spficklin
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d40033ae9d
Moved code for generating sequence out of the sequence field handler and into an API function in the fature_module. Also created a drush command for extracting sequences
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12 lat temu |
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spficklin
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5816ad9df7
added a field and filter handler for a sequence. Also fixed a fwe butgs in the gff loader, added a new function in the feature API for generating a reverse compliment
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12 lat temu |
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spficklin
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7b8f930310
Fixed parsing bug in GFF loader. Moved all include files into an include directory
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12 lat temu |
