 spficklin
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5abfa152c7
Changed feature_add_synonmys function to not use a space, but a carriage return
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12 gadi atpakaļ |
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spficklin
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2756a7cce1
Added brackets around all table names in SQL statements throughout all of Tripal
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12 gadi atpakaļ |
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spficklin
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fc8149faec
Updated the GFF loader to add a date timestamp to the uniquename if none is provided in the GFF file. This ensures that the value will always be unique. Also, updated the GFF file to use the landmark_type provided by the user to look for the landmark if one is provided. Also changed the GFF loader so that it will recognize an entry for landmark using either the uniquename or the name
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12 gadi atpakaļ |
 Lacey Sanderson
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fca91cc322
Added more doxygen commenting -there wasn't any groups for the bulk loader or tripal views
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12 gadi atpakaļ |
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spficklin
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72bf7c5a46
Removed references to old tripal_feature_relagg table
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12 gadi atpakaļ |
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spficklin
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c423725e2a
Updated Doxygen comments
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12 gadi atpakaļ |
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spficklin
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bf802025f2
Added support for paging of chado queries, and adjusted support for genotype templates
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12 gadi atpakaļ |
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spficklin
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c783298b56
Fixed bug in feature/XXX menu callback
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12 gadi atpakaļ |
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spficklin
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9964a101c6
Removed preprocess function that accidentally got incorporated but was for a custom site. Also removed api function in organism module that didn't fit
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12 gadi atpakaļ |
|
spficklin
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fb42852fa2
Reorganization of functions into api, includes and theme files to make all modules consistent
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12 gadi atpakaļ |
|
spficklin
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d2b7b59b9e
Fixed issues with the library module
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12 gadi atpakaļ |
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spficklin
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cf8e652b36
Fixed GFF loader for deleting entries in a GFF file. It was broken
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12 gadi atpakaļ |
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spficklin
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b6444c78ad
Debugging Tripal CV module and created API function for feature relationships
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12 gadi atpakaļ |
|
spficklin
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d7e679c118
Removed match_part from parent/child variables in the alignment preprocess function
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12 gadi atpakaļ |
|
spficklin
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4560a2dce9
Made some additional bug fixes and improvements to the GFF loader
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12 gadi atpakaļ |
|
spficklin
|
8924d71248
Added support to the GFF loader for specifying target species and tyeps
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12 gadi atpakaļ |
|
spficklin
|
48631d702c
Fixed a bug when registering a new analysis module. If the module already existed in the table it threw an error. Now it checks first. Also fixed bug with chado_query to not add a 'chado.' prefix in the 'substring' psql function. Also updated the tripal_core_chado_update module to return the primary key if a single record is updated and if the return_record option is given.
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12 gadi atpakaļ |
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spficklin
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0b674f6e64
Removed old relationship aggregator table and code. We don't use it.
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12 gadi atpakaļ |
|
spficklin
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403d2803cf
Fixed issue #1661530
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12 gadi atpakaļ |
|
spficklin
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9bb94c3748
Fixed issue #1699022. Took out all code that tried to distinguish a revision.
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12 gadi atpakaļ |
|
spficklin
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7c95f3d958
Fixed Issue #1809994. The FASTA loader now correctly loads relationships and external DB referneces. Also, removed the requirement that residues have only IUPAC characters. The check incorrectly forgot protein characters, but also sometimes there may be additional characters and we shouldn't limit the field
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12 gadi atpakaļ |
 ficklin
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96856a97d5
Added template for feature_cvterm recoords
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12 gadi atpakaļ |
|
spficklin
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5fcf1c8645
Oops fixed type
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12 gadi atpakaļ |
|
spficklin
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a81383d8cf
Added functionality similar to GBrowse. Users can access any feature with the following URL http://<your site>/feature/<name>. Tripal will recoginze the URL, search for a feature of that name, uniquename or synonym and redirect to the page. If there are more than one feature that matches, a table with all matches will be shown and the user can select which one they want to see
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12 gadi atpakaļ |
|
spficklin
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cd87d5a56a
Fixed Drupal formatting standards
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12 gadi atpakaļ |
|
spficklin
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d95e608e34
Oops forgot to take out dpm's
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12 gadi atpakaļ |
|
spficklin
|
875cddbbcb
Fixed bug where featurelocs weren't showing up if one of the two FK relationships returned NULL
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12 gadi atpakaļ |
|
spficklin
|
a52dc176d2
Fixed bug where featurelocs weren't showing up if one of the two FK relationships returned NULL
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12 gadi atpakaļ |
|
spficklin
|
2a743acf56
Made transactions optional in GFF loader. Changed all appropriate db_queryt to chado_query in feature module. Added a drush command to sync a single feature (useful for debugging/testing).
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12 gadi atpakaļ |
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spficklin
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87400a3502
Added hook to display args in job view
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12 gadi atpakaļ |
