 spficklin
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fb42852fa2
Reorganization of functions into api, includes and theme files to make all modules consistent
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12 anos atrás |
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spficklin
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b863b7fcee
Ooops type
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12 anos atrás |
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spficklin
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b6444c78ad
Debugging Tripal CV module and created API function for feature relationships
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12 anos atrás |
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spficklin
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09b02611ed
Fixed memory leaks in the Tripal core API when storing the persistent connection. Alos fixed memory leaks in GFF loader and added loading of FASTA sequences embeded in the GFF file ##FASTA section
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12 anos atrás |
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spficklin
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bce50f164a
Fixed bug with drupal_eval and tripal_core_exclude_type_by_default hook. If a quote was present in the string being evaluated it would create errors
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12 anos atrás |
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spficklin
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073b43e3e4
Added additional instructions to analysis form. Fixed typo in feature module
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12 anos atrás |
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spficklin
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cd87d5a56a
Fixed Drupal formatting standards
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12 anos atrás |
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spficklin
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7617a8ed44
Fixes to GFF loader and feature install module
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12 anos atrás |
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spficklin
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774562ff8e
Fixed several memory leask
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12 anos atrás |
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Stephen Ficklin
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226018de46
Fixed sequence formatter function & drush command
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12 anos atrás |
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spficklin
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67bca35cf9
Fixed incorrectly named function, added ability to get sequence by analysi_id in sequence retrieval drush command
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12 anos atrás |
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spficklin
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91184c553b
Fixed the get sequence function to work with Postgres 8.4 and fixed the annotated feature so that it can properly display overlapping parts and show the sequence in reverse complement if on the reverse strand
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12 anos atrás |
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spficklin
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8f64c6204a
Added a requirement that Chado must be accessible before Tripal Views gets installed
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12 anos atrás |
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spficklin
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d8f85709a8
Continuing to fix feature aggreation SQL
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12 anos atrás |
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spficklin
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f69311cda8
Fixed query that pulls flanking sequences
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12 anos atrás |
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spficklin
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9721bd0cd4
Fixed query that pulls flanking sequences
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12 anos atrás |
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spficklin
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f0ab1a8a04
Fixed for coding standards
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12 anos atrás |
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spficklin
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c2a9276bb4
Fixed minor bug in sequence output
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12 anos atrás |
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spficklin
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a9c264ba29
Fixed minor bug in sequence output
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12 anos atrás |
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spficklin
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d40033ae9d
Moved code for generating sequence out of the sequence field handler and into an API function in the fature_module. Also created a drush command for extracting sequences
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12 anos atrás |
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spficklin
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5816ad9df7
added a field and filter handler for a sequence. Also fixed a fwe butgs in the gff loader, added a new function in the feature API for generating a reverse compliment
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12 anos atrás |
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spficklin
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7b8f930310
Fixed parsing bug in GFF loader. Moved all include files into an include directory
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12 anos atrás |
