 spficklin
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3ab974ee52
Added a new tripal_set_active_db function to replace Drupal's set_active_db function. This function allows Tripal to use a chado database in an external location or a chado database within another schema within the Drupal database. This keeps backwards compatibility with older versions of Tripal.
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14 年之前 |
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spficklin
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de147f903a
OBO loader is now functional.
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14 年之前 |
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spficklin
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355491bdfa
Addded the OBO loader to the tripal_cv module and created an online form for starting OBO parsing jobs
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14 年之前 |
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spficklin
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ae11500354
Movoed obo_loader.php to tripal_cv
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14 年之前 |
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spficklin
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5f1f2e560f
Moved the OBO loader to the tripal_cv module
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14 年之前 |
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spficklin
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20eeab6223
Added the beginning stages of an OBO loader. So far, loads CVterms, cvterm_relationships, cvterm_dbxrefs and cvtermprops.
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14 年之前 |
 ccheng
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efeef2c916
fixed a bug for displaying up/down arrow icons when toggling all expandable boxes.
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14 年之前 |
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spficklin
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5e7b3c4b74
Fixed a bug in chado loader
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14 年之前 |
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spficklin
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372e4626ba
Added the first stages of a chado loader. So far, the additions will load chado v1.11 into a 'chado' schema within the same database that Drupal is installed. It also populates the tables with the same data when using the perl scripts.
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14 年之前 |
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spficklin
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87318da4f6
Fixed more bugs
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14 年之前 |
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spficklin
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53420365ff
Fixed a few bugs in tripal_db module
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14 年之前 |
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spficklin
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3a26c1cb26
Fixed a few minor bugs in CV module
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14 年之前 |
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spficklin
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609262cb3d
Theme fixes
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14 年之前 |
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spficklin
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171730108c
Added back in the generic vocabulary browser
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14 年之前 |
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spficklin
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5416d9c6e3
Added a user name column to the jobs table
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14 年之前 |
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spficklin
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cb72de24bb
Added an interface for editing the controlled vocabularies in the tripal_cv module. We still need something to add/edit terms. Also, fixed the interface for updating the cvtermpath table so that a user can select which ontology/vocabulary to update.
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14 年之前 |
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spficklin
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4fb63ec2d8
Changed the database module so that it functions as an AJAX enabled drop-down rather than a large table.
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14 年之前 |
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ccheng
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db70fc1dc6
fixed problems where strcmp() expects a string, not an array.
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14 年之前 |
 mestato
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678799b710
Removed ORF link from html when it is being parsed.:
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14 年之前 |
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mestato
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aa979332af
Fixed called by reference errors.
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14 年之前 |
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mestato
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6698546c6e
When processing the html from an interProScan job, empty tables are removed from the output. Also, empty rows in tables are removed.
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14 年之前 |
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mestato
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e6feb5a9b6
Moved the synchronize functions from the main module to syncFeatures.php. Moved the search indexing functions to indexFeatures.php. This allows each sync or index job to be submitted as a separate system call, thus circumventing a problem with php not releasing memory. Also, syncing and indexing all features may now be done through a command line call instead of only through the web interface.
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14 年之前 |
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mestato
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3d46597777
Removed materialized view unigene_libraries_mview. This mview exited to associate a unigene with all
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14 年之前 |
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mestato
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832463e97e
The syncing method now tries to figure out what type of analysis is being synchronized by checking the cvterm "analysis_type". This cvterm should be added to each analysis by the individual analysis modules or the user if the upload is directly into chado. The value for this cvterm should reflect the name of the module, "tripal_analysis_unigene", "tripal_analysis_blast", etc.
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14 年之前 |
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mestato
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6729e33bcd
Added missing } on line 469.
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14 年之前 |
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mestato
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61a9834df0
Add abililty for analysis module to detect a unigene-type analysis. Previously made unigene type analyses into generic type analyses.
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14 年之前 |
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mestato
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442a75c16a
Fixed typo where interval was missing dollar sign.
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14 年之前 |
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mestato
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14dde24292
The validate function now handles three schenarios:
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14 年之前 |
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mestato
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4e3a64a161
Complete revision fo the cleanup method. Still deletes any orphans between node and chado_analysis in drupal but also checks for orphans without records in chado.
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14 年之前 |
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mestato
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60d7f0e812
Fixed internal script reference to itself from tripal_job_launcher.php to tripal_jobs_launch_multi.php.
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14 年之前 |
