 spficklin
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3efbf1ed79
Fixed coding standards problems as found by the coder module
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12 年 前 |
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spficklin
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0778b71d77
Updating main branch with fixes to feature moduel for alignments. Also fixed but in Core API
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12 年 前 |
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Stephen Ficklin
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9001868cf7
Fixed a bug in the chado_expand_vars API function call. When a foreign key relationship existed with the same table twice (e.g. subject_id and object_id both map to feature_id in the feature_relationship table) then only one of the relationships would appear in the resulting object
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12 年 前 |
 Lacey Sanderson
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bf690ad30e
Added progress bar to bulk loader command-line output and warning to bulk loader node: job progress and loading summary doesn't update until the end of each constant set (ie: the end of each transaction)
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12 年 前 |
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Lacey Sanderson
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0728c08b4a
Merge branch '6.x-0.4-dev' of git.drupal.org:sandbox/spficklin/1337878 into 6.x-0.4-dev
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12 年 前 |
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Stephen Ficklin
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e408d9e4a3
fixed some errors where objects were not first created
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12 年 前 |
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Lacey Sanderson
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e45a619f3b
Coding Standards: Final cleanup for tripal_core; added @coder-ignore for errors to be ignored
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12 年 前 |
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Lacey Sanderson
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386f0b6b5c
Added ability to specify lock modes for all tables the bulk loading job is inserted into
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12 年 前 |
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Lacey Sanderson
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716ce8912d
removed dpm
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12 年 前 |
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Lacey Sanderson
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bc185d228b
Added ability to tell tripal_core_chado_insert to skip validation and take it's chances -default is to validate
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12 年 前 |
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Lacey Sanderson
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11e0888acb
Added delayed constraint checking to available bulk loader speed-up options
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12 年 前 |
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Lacey Sanderson
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aadfaec690
Added transaction API functions: tripal_db_start_transaction(), tripal_db_set_savepoint_transaction(, = FALSE), tripal_db_commit_transaction(), tripal_db_rollback_transaction( = NULL)
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12 年 前 |
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Lacey Sanderson
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4aec4553ef
BUG FIX: Now actually uses prepared statements -before was creating the persistent connection but not using it
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12 年 前 |
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Lacey Sanderson
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fabedccb75
Merged in 6.x-0.4-dev after tripal_core was amde compliant to drupal coding standards
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12 年 前 |
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Lacey Sanderson
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13f1b69a3c
merged 6.x-0.4-dev from before the coding standards re-write
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12 年 前 |
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Lacey Sanderson
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c8c12f92c0
Tripal Core API insert now uses prepared statements (not pg_prepare)
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12 年 前 |
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Lacey Sanderson
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fd4a688c69
Tripal Core now matches Drupal coding standards
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12 年 前 |
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Stephen Ficklin
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a56102450e
Changed MViews to accept a Schema API array. It is still backwards compatible and can accept old style postgres column definitions. Also, MViews created with a Drupal API schema array are automatically integreated as a custom table and therefore can be used to join with other MViews or Chado tables in the Views Integration
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12 年 前 |
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Lacey Sanderson
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8438e0e166
Added tripal_db_persistent_chado(), tripal_db_release_persistent_chado(). Also tripal_core_chado_insert() now uses prepared statements :)
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12 年 前 |
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Stephen Ficklin
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308000ead1
various bug fixes.. can't remember all
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13 年 前 |
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Stephen Ficklin
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e03f5d2e67
Some changes to tripal_core_chado_create_table API function
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13 年 前 |
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Stephen Ficklin
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bcc8d13f15
Added a new API call for creating tables in Chado
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13 年 前 |
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Stephen Ficklin
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c0d1e82f08
incremental commit to keep from losing work
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13 年 前 |
 Stephen Ficklin
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87a16fbff7
Added new select/insert/delete/update for featureprop and analysisfeatureprop tables. Also added update_property_by_id and delete_property_by_id functions to the core API. Added a new drush command to launch jobs
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13 年 前 |
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spficklin
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af2ff151e6
Moved most extensions out. Moved base modules out of 'base' directory
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13 年 前 |
 alexgl
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bedfa4fc81
moving a few modules into modules base
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13 年 前 |
 ccheng
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d227d04405
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13 年 前 |
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spficklin
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64d5b96f29
Fixed the tripal core to allow inclusion of 'NULL' values in inserts and updates. Also, added support for 'Gap', 'Target', and 'Derives_from' attributes in the GFF3 file.
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13 年 前 |
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spficklin
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95e1b150fc
Fixed multiple things including the following
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13 年 前 |
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spficklin
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50b706d146
More Doxygen documenation
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14 年 前 |
