 Stephen Ficklin
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086eb4b649
Fixed bug in sequence retreval API function if parent has no residues
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vor 11 Jahren |
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Stephen Ficklin
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0ab56cac4a
Updated defline of seq retreival API function to include genus and species of parent equence
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vor 11 Jahren |
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Stephen Ficklin
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1f1a1c213a
Updated seq extract with better from field descriptions
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vor 12 Jahren |
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spficklin
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2756a7cce1
Added brackets around all table names in SQL statements throughout all of Tripal
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vor 12 Jahren |
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spficklin
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ed0dad3cf7
Provided some code clenup for the analysis module, added new API functions to the tripal_feature module, and added new case checking to some of the API calls in the Tripal core
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vor 12 Jahren |
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spficklin
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c423725e2a
Updated Doxygen comments
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vor 12 Jahren |
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spficklin
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fb42852fa2
Reorganization of functions into api, includes and theme files to make all modules consistent
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vor 12 Jahren |
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spficklin
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b863b7fcee
Ooops type
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vor 12 Jahren |
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spficklin
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b6444c78ad
Debugging Tripal CV module and created API function for feature relationships
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vor 12 Jahren |
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spficklin
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09b02611ed
Fixed memory leaks in the Tripal core API when storing the persistent connection. Alos fixed memory leaks in GFF loader and added loading of FASTA sequences embeded in the GFF file ##FASTA section
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vor 12 Jahren |
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spficklin
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bce50f164a
Fixed bug with drupal_eval and tripal_core_exclude_type_by_default hook. If a quote was present in the string being evaluated it would create errors
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vor 12 Jahren |
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spficklin
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073b43e3e4
Added additional instructions to analysis form. Fixed typo in feature module
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vor 12 Jahren |
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spficklin
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cd87d5a56a
Fixed Drupal formatting standards
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vor 12 Jahren |
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spficklin
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7617a8ed44
Fixes to GFF loader and feature install module
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vor 12 Jahren |
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spficklin
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774562ff8e
Fixed several memory leask
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vor 12 Jahren |
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Stephen Ficklin
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226018de46
Fixed sequence formatter function & drush command
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vor 12 Jahren |
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spficklin
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67bca35cf9
Fixed incorrectly named function, added ability to get sequence by analysi_id in sequence retrieval drush command
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vor 12 Jahren |
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spficklin
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91184c553b
Fixed the get sequence function to work with Postgres 8.4 and fixed the annotated feature so that it can properly display overlapping parts and show the sequence in reverse complement if on the reverse strand
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vor 12 Jahren |
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spficklin
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8f64c6204a
Added a requirement that Chado must be accessible before Tripal Views gets installed
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vor 12 Jahren |
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spficklin
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d8f85709a8
Continuing to fix feature aggreation SQL
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vor 12 Jahren |
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spficklin
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f69311cda8
Fixed query that pulls flanking sequences
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vor 12 Jahren |
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spficklin
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9721bd0cd4
Fixed query that pulls flanking sequences
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vor 12 Jahren |
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spficklin
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f0ab1a8a04
Fixed for coding standards
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vor 12 Jahren |
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spficklin
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c2a9276bb4
Fixed minor bug in sequence output
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vor 12 Jahren |
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spficklin
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a9c264ba29
Fixed minor bug in sequence output
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vor 12 Jahren |
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spficklin
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d40033ae9d
Moved code for generating sequence out of the sequence field handler and into an API function in the fature_module. Also created a drush command for extracting sequences
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vor 12 Jahren |
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spficklin
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5816ad9df7
added a field and filter handler for a sequence. Also fixed a fwe butgs in the gff loader, added a new function in the feature API for generating a reverse compliment
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vor 12 Jahren |
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spficklin
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7b8f930310
Fixed parsing bug in GFF loader. Moved all include files into an include directory
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vor 12 Jahren |
