 spficklin
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53b9506b4e
Preliminary commit of converted tripal_library module
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11 years ago |
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spficklin
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34bfc95115
Nightly checking
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11 years ago |
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spficklin
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7dd85b3ed0
Fixed bug in core for 7.x
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11 years ago |
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spficklin
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5d898e12aa
Working on updating feature module to Drupal 7x.
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11 years ago |
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spficklin
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d922b7a57b
Fixed minor coding review problems
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11 years ago |
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spficklin
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69e0f8271f
Merge branch '6.x-1.x' into 7.x-2.x
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11 years ago |
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spficklin
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921557cca7
Changed the way URLs for features and stocks are created. Admins can now buil the URL string using place holders
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11 years ago |
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spficklin
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ff37627b86
Added ability to set URLs for stocks. Added ability to configure format of stock and feature page titles. Changed the stock syncing to match that of features. Removed the ability to set the title for stocks and features. Titles get set automatically now.
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11 years ago |
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Stephen Ficklin
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9e3ce4187b
Added template for showing proteins on feature pages if they have a relationship of 'derives_from'
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11 years ago |
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Stephen Ficklin
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32a7b2673f
Fixed long running query for retrieving matched alignments (e.g. EST_match)
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11 years ago |
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spficklin
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8a898014b8
Renamed branch from 7.x-1.x to 7.x-2.x. Also merged bug fixes from 6.x-1.x
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11 years ago |
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spficklin
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98edb56e8d
Fixed bug in permissions for all modules that create node types. When testing if a node type should be created the function should always return true if the permission is set
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11 years ago |
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spficklin
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a43ef3d007
Made feature node use autocomplete field for type when creating/editing a feature. Also added additional docuemntation for how to add property types to analysies and featuremaps when editing/inserting
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11 years ago |
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spficklin
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a94ec98cc0
Removed interface for properties, relationships, etc. for features. and fixed bug in inserting analysis properties
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11 years ago |
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spficklin
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9d7bf94295
Changed chado_get_id_for_node API call to accept nid as second parameter and fixed all calls in all modules. Organism module can now sync, edit, upload image for an organism
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11 years ago |
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spficklin
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9530be9e77
Chado installer is fully functional in Drupla 7
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11 years ago |
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spficklin
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388824ca96
Added feature_featurepos template
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11 years ago |
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spficklin
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8c6bc34363
Added feature phenotype template
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11 years ago |
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spficklin
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1156b83efb
Added support for 'organism=genus:speices' attribute for importing GFF files
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11 years ago |
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spficklin
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57e4e62025
Changed URL path for sequence retrieval
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11 years ago |
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spficklin
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079f9f0375
Moved form elements from views module to Tripal core and updated seq extract form to use the file upload combo element. Also renamed include files to have a .inc extension rather than a .php extension in the core moduel
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11 years ago |
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spficklin
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937df20c85
Continued development of seq_extract form
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11 years ago |
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spficklin
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b87e95f9af
Added AHAH-enabled form for sequence retrieveal
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11 years ago |
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spficklin
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1400425db6
Added configuration page to tripal_pub module
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12 years ago |
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spficklin
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5abfa152c7
Changed feature_add_synonmys function to not use a space, but a carriage return
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12 years ago |
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spficklin
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2756a7cce1
Added brackets around all table names in SQL statements throughout all of Tripal
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12 years ago |
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spficklin
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fc8149faec
Updated the GFF loader to add a date timestamp to the uniquename if none is provided in the GFF file. This ensures that the value will always be unique. Also, updated the GFF file to use the landmark_type provided by the user to look for the landmark if one is provided. Also changed the GFF loader so that it will recognize an entry for landmark using either the uniquename or the name
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12 years ago |
 Lacey Sanderson
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fca91cc322
Added more doxygen commenting -there wasn't any groups for the bulk loader or tripal views
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12 years ago |
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spficklin
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72bf7c5a46
Removed references to old tripal_feature_relagg table
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12 years ago |
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spficklin
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c423725e2a
Updated Doxygen comments
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12 years ago |
