 Risharde Ramnath
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5e98649061
2 additional unit tests and corresponding gff files related to ID validations for unescaped whitespaces and IDs beginning with right arrow character
|
il y a 4 ans |
 Stephen Ficklin
|
8b0cfedbe4
Added check for Gap in the GFF
|
il y a 4 ans |
|
Risharde Ramnath
|
bde6690233
Bug fix that makes GFFImporter caching of features work correctly
|
il y a 4 ans |
|
Stephen Ficklin
|
4ef5653ee0
Fixed caching bug and cleaned up memory leaks
|
il y a 4 ans |
|
Stephen Ficklin
|
0ab2db8eb1
Now FASTA sequences are being added... all done except testing!
|
il y a 4 ans |
|
Stephen Ficklin
|
2a7510c736
Now supports creation of proteins and tarets
|
il y a 4 ans |
|
Stephen Ficklin
|
dbedaf88b0
GFF3 loader: Added file caching to reduce memory requirements. Added insert to analyisfeature table
|
il y a 4 ans |
|
Stephen Ficklin
|
f2bd2bb030
Fixed bugs in GFF loader when landmarks are present and with finding feature property CV terms
|
il y a 4 ans |
|
Stephen Ficklin
|
d14083521c
minor updates
|
il y a 4 ans |
|
Stephen Ficklin
|
935339fe50
Uncommented FASTA loading
|
il y a 4 ans |
|
Stephen Ficklin
|
f48925d9ff
Improved memory performance, now supports updates to existing records
|
il y a 4 ans |
|
Stephen Ficklin
|
7ddece2def
Now supporting the organism attribute
|
il y a 4 ans |
|
Stephen Ficklin
|
70ca9bb46e
periodic checkin
|
il y a 4 ans |
|
Stephen Ficklin
|
2c9f613b93
Now supporting Ontology_term
|
il y a 4 ans |
|
Stephen Ficklin
|
ad24a2ad57
Periodic checkin. Fixed quite a few issues and simplified some code
|
il y a 4 ans |
 Peter Richter
|
87b3e15dbf
Add loadFastas functionality in GFF3Importer
|
il y a 4 ans |
|
Peter Richter
|
0f922ac4ff
Update GFF3Importer - Load Derives_froms
|
il y a 4 ans |
|
Peter Richter
|
e8548ad31a
Uncomment actual insertion of FeatureLocs batch
|
il y a 4 ans |
|
Peter Richter
|
7ef8a2b7e6
Get sequence cv from $this->feature_cv
|
il y a 4 ans |
|
Peter Richter
|
c599975d97
Use corrected fmax
|
il y a 4 ans |
|
Peter Richter
|
59154d4900
Fix assignFeatureIDs
|
il y a 4 ans |
|
Peter Richter
|
fe28ce4bf7
Update GFF3Importer - Load Dbxrefs
|
il y a 4 ans |
|
Stephen Ficklin
|
7f25c0f0dc
Updates to the GFF3 loader
|
il y a 4 ans |
|
Stephen Ficklin
|
4445b1c165
Fixed bug in new GFF3 loader with landmark creation
|
il y a 4 ans |
|
Stephen Ficklin
|
6c90a75a49
new GFF3 loader now supports aliases
|
il y a 4 ans |
|
Stephen Ficklin
|
d75a16a2d3
new GFF3 loader now supports featureprop and featureloc
|
il y a 4 ans |
|
Stephen Ficklin
|
2cd2a5e14e
Rewrite of GFF3 loader working with base features
|
il y a 4 ans |
|
Stephen Ficklin
|
c040951961
Testing updates to loader using ChaodRecord
|
il y a 4 ans |
|
Peter Richter
|
6d86c97c49
Skip validation for inserts into chado tables
|
il y a 4 ans |
|
Peter Richter
|
c6bdf738b3
Minor fixes in GFF3Importer
|
il y a 4 ans |
