 Stephen Ficklin
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482400e042
Fixed bug in GFF loader
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10 years ago |
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Stephen Ficklin
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22519a8f6e
Fixed SQL on sequence retrieval for relationships
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11 years ago |
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Stephen Ficklin
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1d831e53d8
Fixed bugs with the sequence extraction when traversing relationships
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11 years ago |
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spficklin
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9b667e1547
Added new functionality to sequence extract function to traverse relationships
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11 years ago |
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spficklin
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8762ae675c
Trying to fix bug in feature API call to extract feature sequence from alignment
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11 years ago |
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Stephen Ficklin
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086eb4b649
Fixed bug in sequence retreval API function if parent has no residues
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11 years ago |
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Stephen Ficklin
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0ab56cac4a
Updated defline of seq retreival API function to include genus and species of parent equence
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11 years ago |
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Stephen Ficklin
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1f1a1c213a
Updated seq extract with better from field descriptions
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11 years ago |
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spficklin
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2756a7cce1
Added brackets around all table names in SQL statements throughout all of Tripal
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11 years ago |
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spficklin
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ed0dad3cf7
Provided some code clenup for the analysis module, added new API functions to the tripal_feature module, and added new case checking to some of the API calls in the Tripal core
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11 years ago |
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spficklin
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c423725e2a
Updated Doxygen comments
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11 years ago |
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spficklin
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fb42852fa2
Reorganization of functions into api, includes and theme files to make all modules consistent
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11 years ago |
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spficklin
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b863b7fcee
Ooops type
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11 years ago |
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spficklin
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b6444c78ad
Debugging Tripal CV module and created API function for feature relationships
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11 years ago |
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spficklin
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09b02611ed
Fixed memory leaks in the Tripal core API when storing the persistent connection. Alos fixed memory leaks in GFF loader and added loading of FASTA sequences embeded in the GFF file ##FASTA section
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11 years ago |
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spficklin
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bce50f164a
Fixed bug with drupal_eval and tripal_core_exclude_type_by_default hook. If a quote was present in the string being evaluated it would create errors
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11 years ago |
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spficklin
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073b43e3e4
Added additional instructions to analysis form. Fixed typo in feature module
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12 years ago |
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spficklin
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cd87d5a56a
Fixed Drupal formatting standards
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12 years ago |
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spficklin
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7617a8ed44
Fixes to GFF loader and feature install module
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12 years ago |
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spficklin
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774562ff8e
Fixed several memory leask
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12 years ago |
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Stephen Ficklin
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226018de46
Fixed sequence formatter function & drush command
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12 years ago |
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spficklin
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67bca35cf9
Fixed incorrectly named function, added ability to get sequence by analysi_id in sequence retrieval drush command
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12 years ago |
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spficklin
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91184c553b
Fixed the get sequence function to work with Postgres 8.4 and fixed the annotated feature so that it can properly display overlapping parts and show the sequence in reverse complement if on the reverse strand
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12 years ago |
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spficklin
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8f64c6204a
Added a requirement that Chado must be accessible before Tripal Views gets installed
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12 years ago |
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spficklin
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d8f85709a8
Continuing to fix feature aggreation SQL
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12 years ago |
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spficklin
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f69311cda8
Fixed query that pulls flanking sequences
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12 years ago |
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spficklin
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9721bd0cd4
Fixed query that pulls flanking sequences
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12 years ago |
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spficklin
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f0ab1a8a04
Fixed for coding standards
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12 years ago |
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spficklin
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c2a9276bb4
Fixed minor bug in sequence output
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12 years ago |
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spficklin
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a9c264ba29
Fixed minor bug in sequence output
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12 years ago |
