 Stephen Ficklin
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482400e042
Fixed bug in GFF loader
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10 vuotta sitten |
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Stephen Ficklin
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22519a8f6e
Fixed SQL on sequence retrieval for relationships
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11 vuotta sitten |
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Stephen Ficklin
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1d831e53d8
Fixed bugs with the sequence extraction when traversing relationships
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11 vuotta sitten |
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spficklin
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9b667e1547
Added new functionality to sequence extract function to traverse relationships
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11 vuotta sitten |
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spficklin
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8762ae675c
Trying to fix bug in feature API call to extract feature sequence from alignment
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11 vuotta sitten |
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Stephen Ficklin
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086eb4b649
Fixed bug in sequence retreval API function if parent has no residues
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11 vuotta sitten |
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Stephen Ficklin
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0ab56cac4a
Updated defline of seq retreival API function to include genus and species of parent equence
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11 vuotta sitten |
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Stephen Ficklin
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1f1a1c213a
Updated seq extract with better from field descriptions
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11 vuotta sitten |
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spficklin
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2756a7cce1
Added brackets around all table names in SQL statements throughout all of Tripal
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11 vuotta sitten |
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spficklin
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ed0dad3cf7
Provided some code clenup for the analysis module, added new API functions to the tripal_feature module, and added new case checking to some of the API calls in the Tripal core
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11 vuotta sitten |
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spficklin
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c423725e2a
Updated Doxygen comments
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11 vuotta sitten |
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spficklin
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fb42852fa2
Reorganization of functions into api, includes and theme files to make all modules consistent
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11 vuotta sitten |
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spficklin
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b863b7fcee
Ooops type
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11 vuotta sitten |
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spficklin
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b6444c78ad
Debugging Tripal CV module and created API function for feature relationships
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11 vuotta sitten |
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spficklin
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09b02611ed
Fixed memory leaks in the Tripal core API when storing the persistent connection. Alos fixed memory leaks in GFF loader and added loading of FASTA sequences embeded in the GFF file ##FASTA section
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11 vuotta sitten |
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spficklin
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bce50f164a
Fixed bug with drupal_eval and tripal_core_exclude_type_by_default hook. If a quote was present in the string being evaluated it would create errors
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11 vuotta sitten |
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spficklin
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073b43e3e4
Added additional instructions to analysis form. Fixed typo in feature module
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12 vuotta sitten |
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spficklin
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cd87d5a56a
Fixed Drupal formatting standards
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12 vuotta sitten |
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spficklin
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7617a8ed44
Fixes to GFF loader and feature install module
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12 vuotta sitten |
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spficklin
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774562ff8e
Fixed several memory leask
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12 vuotta sitten |
|
Stephen Ficklin
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226018de46
Fixed sequence formatter function & drush command
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12 vuotta sitten |
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spficklin
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67bca35cf9
Fixed incorrectly named function, added ability to get sequence by analysi_id in sequence retrieval drush command
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12 vuotta sitten |
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spficklin
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91184c553b
Fixed the get sequence function to work with Postgres 8.4 and fixed the annotated feature so that it can properly display overlapping parts and show the sequence in reverse complement if on the reverse strand
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12 vuotta sitten |
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spficklin
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8f64c6204a
Added a requirement that Chado must be accessible before Tripal Views gets installed
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12 vuotta sitten |
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spficklin
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d8f85709a8
Continuing to fix feature aggreation SQL
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12 vuotta sitten |
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spficklin
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f69311cda8
Fixed query that pulls flanking sequences
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12 vuotta sitten |
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spficklin
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9721bd0cd4
Fixed query that pulls flanking sequences
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12 vuotta sitten |
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spficklin
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f0ab1a8a04
Fixed for coding standards
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12 vuotta sitten |
|
spficklin
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c2a9276bb4
Fixed minor bug in sequence output
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12 vuotta sitten |
|
spficklin
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a9c264ba29
Fixed minor bug in sequence output
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12 vuotta sitten |
