 Stephen Ficklin
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482400e042
Fixed bug in GFF loader
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10 anni fa |
|
Stephen Ficklin
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22519a8f6e
Fixed SQL on sequence retrieval for relationships
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11 anni fa |
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Stephen Ficklin
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1d831e53d8
Fixed bugs with the sequence extraction when traversing relationships
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11 anni fa |
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spficklin
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9b667e1547
Added new functionality to sequence extract function to traverse relationships
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11 anni fa |
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spficklin
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8762ae675c
Trying to fix bug in feature API call to extract feature sequence from alignment
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11 anni fa |
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Stephen Ficklin
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086eb4b649
Fixed bug in sequence retreval API function if parent has no residues
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11 anni fa |
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Stephen Ficklin
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0ab56cac4a
Updated defline of seq retreival API function to include genus and species of parent equence
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11 anni fa |
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Stephen Ficklin
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1f1a1c213a
Updated seq extract with better from field descriptions
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11 anni fa |
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spficklin
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2756a7cce1
Added brackets around all table names in SQL statements throughout all of Tripal
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11 anni fa |
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spficklin
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ed0dad3cf7
Provided some code clenup for the analysis module, added new API functions to the tripal_feature module, and added new case checking to some of the API calls in the Tripal core
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11 anni fa |
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spficklin
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c423725e2a
Updated Doxygen comments
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11 anni fa |
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spficklin
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fb42852fa2
Reorganization of functions into api, includes and theme files to make all modules consistent
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11 anni fa |
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spficklin
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b863b7fcee
Ooops type
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11 anni fa |
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spficklin
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b6444c78ad
Debugging Tripal CV module and created API function for feature relationships
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11 anni fa |
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spficklin
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09b02611ed
Fixed memory leaks in the Tripal core API when storing the persistent connection. Alos fixed memory leaks in GFF loader and added loading of FASTA sequences embeded in the GFF file ##FASTA section
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11 anni fa |
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spficklin
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bce50f164a
Fixed bug with drupal_eval and tripal_core_exclude_type_by_default hook. If a quote was present in the string being evaluated it would create errors
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11 anni fa |
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spficklin
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073b43e3e4
Added additional instructions to analysis form. Fixed typo in feature module
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12 anni fa |
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spficklin
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cd87d5a56a
Fixed Drupal formatting standards
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12 anni fa |
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spficklin
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7617a8ed44
Fixes to GFF loader and feature install module
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12 anni fa |
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spficklin
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774562ff8e
Fixed several memory leask
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12 anni fa |
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Stephen Ficklin
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226018de46
Fixed sequence formatter function & drush command
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12 anni fa |
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spficklin
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67bca35cf9
Fixed incorrectly named function, added ability to get sequence by analysi_id in sequence retrieval drush command
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12 anni fa |
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spficklin
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91184c553b
Fixed the get sequence function to work with Postgres 8.4 and fixed the annotated feature so that it can properly display overlapping parts and show the sequence in reverse complement if on the reverse strand
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12 anni fa |
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spficklin
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8f64c6204a
Added a requirement that Chado must be accessible before Tripal Views gets installed
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12 anni fa |
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spficklin
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d8f85709a8
Continuing to fix feature aggreation SQL
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12 anni fa |
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spficklin
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f69311cda8
Fixed query that pulls flanking sequences
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12 anni fa |
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spficklin
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9721bd0cd4
Fixed query that pulls flanking sequences
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12 anni fa |
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spficklin
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f0ab1a8a04
Fixed for coding standards
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12 anni fa |
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spficklin
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c2a9276bb4
Fixed minor bug in sequence output
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12 anni fa |
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spficklin
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a9c264ba29
Fixed minor bug in sequence output
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12 anni fa |
