 Ficklin
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f3f17b6ec1
Fixed merge conflict
|
9 rokov pred |
|
Ficklin
|
83e06c6f3d
Removed unneeded indexFeatures.inc file
|
9 rokov pred |
|
Stephen Ficklin
|
280e58dbb9
Added fix to the feature redirect
|
10 rokov pred |
|
spficklin
|
9c92baa0c2
bug fixes for strict PHP
|
11 rokov pred |
|
spficklin
|
921557cca7
Changed the way URLs for features and stocks are created. Admins can now buil the URL string using place holders
|
11 rokov pred |
|
spficklin
|
ff37627b86
Added ability to set URLs for stocks. Added ability to configure format of stock and feature page titles. Changed the stock syncing to match that of features. Removed the ability to set the title for stocks and features. Titles get set automatically now.
|
11 rokov pred |
|
Stephen Ficklin
|
9e3ce4187b
Added template for showing proteins on feature pages if they have a relationship of 'derives_from'
|
11 rokov pred |
|
Stephen Ficklin
|
32a7b2673f
Fixed long running query for retrieving matched alignments (e.g. EST_match)
|
11 rokov pred |
|
spficklin
|
98edb56e8d
Fixed bug in permissions for all modules that create node types. When testing if a node type should be created the function should always return true if the permission is set
|
11 rokov pred |
|
spficklin
|
a43ef3d007
Made feature node use autocomplete field for type when creating/editing a feature. Also added additional docuemntation for how to add property types to analysies and featuremaps when editing/inserting
|
11 rokov pred |
|
spficklin
|
a94ec98cc0
Removed interface for properties, relationships, etc. for features. and fixed bug in inserting analysis properties
|
11 rokov pred |
|
spficklin
|
388824ca96
Added feature_featurepos template
|
11 rokov pred |
|
spficklin
|
8c6bc34363
Added feature phenotype template
|
11 rokov pred |
|
spficklin
|
1156b83efb
Added support for 'organism=genus:speices' attribute for importing GFF files
|
11 rokov pred |
|
spficklin
|
57e4e62025
Changed URL path for sequence retrieval
|
11 rokov pred |
|
spficklin
|
079f9f0375
Moved form elements from views module to Tripal core and updated seq extract form to use the file upload combo element. Also renamed include files to have a .inc extension rather than a .php extension in the core moduel
|
11 rokov pred |
|
spficklin
|
937df20c85
Continued development of seq_extract form
|
11 rokov pred |
|
spficklin
|
b87e95f9af
Added AHAH-enabled form for sequence retrieveal
|
11 rokov pred |
|
spficklin
|
1400425db6
Added configuration page to tripal_pub module
|
11 rokov pred |
|
spficklin
|
5abfa152c7
Changed feature_add_synonmys function to not use a space, but a carriage return
|
11 rokov pred |
|
spficklin
|
2756a7cce1
Added brackets around all table names in SQL statements throughout all of Tripal
|
11 rokov pred |
|
spficklin
|
fc8149faec
Updated the GFF loader to add a date timestamp to the uniquename if none is provided in the GFF file. This ensures that the value will always be unique. Also, updated the GFF file to use the landmark_type provided by the user to look for the landmark if one is provided. Also changed the GFF loader so that it will recognize an entry for landmark using either the uniquename or the name
|
11 rokov pred |
 Lacey Sanderson
|
fca91cc322
Added more doxygen commenting -there wasn't any groups for the bulk loader or tripal views
|
11 rokov pred |
|
spficklin
|
72bf7c5a46
Removed references to old tripal_feature_relagg table
|
11 rokov pred |
|
spficklin
|
c423725e2a
Updated Doxygen comments
|
11 rokov pred |
|
spficklin
|
bf802025f2
Added support for paging of chado queries, and adjusted support for genotype templates
|
11 rokov pred |
|
spficklin
|
c783298b56
Fixed bug in feature/XXX menu callback
|
11 rokov pred |
|
spficklin
|
9964a101c6
Removed preprocess function that accidentally got incorporated but was for a custom site. Also removed api function in organism module that didn't fit
|
11 rokov pred |
|
spficklin
|
fb42852fa2
Reorganization of functions into api, includes and theme files to make all modules consistent
|
11 rokov pred |
|
spficklin
|
d2b7b59b9e
Fixed issues with the library module
|
11 rokov pred |
