 Stephen Ficklin
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24cf39f91b
added template for the organism references, anf fixed obo loader when missing default namespace
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%!s(int64=10) %!d(string=hai) anos |
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spficklin
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39e90c2263
Fixed bug resulting from accidental typo in the organism node_info hook that was introduced in the last push
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%!s(int64=11) %!d(string=hai) anos |
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spficklin
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98edb56e8d
Fixed bug in permissions for all modules that create node types. When testing if a node type should be created the function should always return true if the permission is set
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%!s(int64=11) %!d(string=hai) anos |
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spficklin
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4622aa3c46
Fixed bug with syncing organisms
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%!s(int64=11) %!d(string=hai) anos |
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spficklin
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b405ae3afb
Continued development of Contact and Publiation modules
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%!s(int64=11) %!d(string=hai) anos |
 Lacey Sanderson
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fca91cc322
Added more doxygen commenting -there wasn't any groups for the bulk loader or tripal views
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%!s(int64=11) %!d(string=hai) anos |
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spficklin
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7547efd269
Changed directory structure of organism module to match the others. Added an admin.inc and a new theme directory and an api directory.
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%!s(int64=11) %!d(string=hai) anos |
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spficklin
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128443c86a
Cleaned up featuremap module. Added unittype_id to form and created cvterms for the unit types
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%!s(int64=11) %!d(string=hai) anos |
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spficklin
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9bb94c3748
Fixed issue #1699022. Took out all code that tried to distinguish a revision.
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%!s(int64=11) %!d(string=hai) anos |
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spficklin
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42fe28540f
Fixed issue #1712422. Changed all Chado querie to use chado_query() rather than db_query()
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%!s(int64=11) %!d(string=hai) anos |
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spficklin
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2fd046eebd
Forgot tripal_organism_teaser in theme
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%!s(int64=12) %!d(string=hai) anos |
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spficklin
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cd87d5a56a
Fixed Drupal formatting standards
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%!s(int64=12) %!d(string=hai) anos |
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Stephen Ficklin
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a28f785f25
Had to rollback a fix that removed memory leaks, but it casued other problems
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%!s(int64=12) %!d(string=hai) anos |
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spficklin
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2840b98e85
All node types (except stock) have a function to cleanup orphaned nodes but it wasn't complete for some. A new core API function was created that all modules with node types can use to clean up orphaned nodes. Also, the drush trpjob-run command was fixed so that a username must be provided to run the job
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%!s(int64=12) %!d(string=hai) anos |
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spficklin
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c324a8440f
Merged in 6.x-6233304-Support_for_Chado_v1.2 branch and removed non-views stocks page
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%!s(int64=12) %!d(string=hai) anos |
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spficklin
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06ed7b835c
Removed old organism and analyses lists as this duplicates are default views and views is easy enough to install if someone wants the list
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%!s(int64=12) %!d(string=hai) anos |
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spficklin
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bc6d1b4c41
Fixed revisions in update
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%!s(int64=12) %!d(string=hai) anos |
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Stephen Ficklin
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1dae1ea23a
Revisions weren't working properly for organisms. Fixed it
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%!s(int64=12) %!d(string=hai) anos |
 Pubudu Basnayaka
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aaed62d7f5
Tripal Organism adheres to Drupal coding standards
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%!s(int64=12) %!d(string=hai) anos |
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Pubudu Basnayaka
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e6e051e53d
Tripal Organism now adhere to Drupal coding standards
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%!s(int64=12) %!d(string=hai) anos |
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spficklin
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af2ff151e6
Moved most extensions out. Moved base modules out of 'base' directory
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%!s(int64=12) %!d(string=hai) anos |
 alexgl
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c5d67e59c6
moving more modules into base and extensions respectively
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%!s(int64=13) %!d(string=hai) anos |
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spficklin
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fb76301d42
Fixed hook_access for all modules. This change supports use of other access permission modules, such as "node privacy by role"
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%!s(int64=13) %!d(string=hai) anos |
 ccheng
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9e1584f598
Update permission checks
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%!s(int64=13) %!d(string=hai) anos |
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ccheng
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047eb8a0e8
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%!s(int64=13) %!d(string=hai) anos |
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spficklin
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95e1b150fc
Fixed multiple things including the following
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%!s(int64=13) %!d(string=hai) anos |
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spficklin
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f3f1671a51
Fixed a bug in the organism module where it wouldn't sync the organism
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%!s(int64=13) %!d(string=hai) anos |
 laceysanderson
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e0500f0746
Tripal: Added documentation
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%!s(int64=13) %!d(string=hai) anos |
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spficklin
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b90ea5955d
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%!s(int64=13) %!d(string=hai) anos |
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spficklin
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0dd8d23333
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%!s(int64=13) %!d(string=hai) anos |
