 spficklin
|
fdd548a327
Removed old hook_views_data and hook_views_alter from all modules as the views integration now handles integrating all of the tables. Those were older functions used before views integration was completed. Also, fixed the joins of linker tables with nodes to be recipricol with base tables. If you used node as the base table you couldn't join on the corresponding chado table. That's fixed
|
11 gadi atpakaļ |
 Lacey Sanderson
|
6ce560e2dc
Small fix to tripal views allowing non-chado tables to be integrated without no fields warning (non-chado tables are not in the Tripal schema api)
|
11 gadi atpakaļ |
|
spficklin
|
c423725e2a
Updated Doxygen comments
|
11 gadi atpakaļ |
|
spficklin
|
26c71f98dc
Oops forgot to take out dpm
|
12 gadi atpakaļ |
|
spficklin
|
a6ac1cf074
Added a pre_execute and post_render hook to the views integration to switch the search path before a view is executed if the base table is a Chado table. This is a temporary fix to the problem if a table in the Drupal schema is the same as a table in Chado.
|
12 gadi atpakaļ |
|
spficklin
|
cd87d5a56a
Fixed Drupal formatting standards
|
12 gadi atpakaļ |
|
spficklin
|
b7c7cd26de
Added a function that lists all tables in a Chado schema (per version) and altered the core to use that function. Previously it used a Postgres SQL statement to pull out all tables in the schema but this caused problems when non Chado tables were also present in the schema.
|
12 gadi atpakaļ |
|
spficklin
|
2a44eac059
removed dpm
|
12 gadi atpakaļ |
|
spficklin
|
5e017e52c0
Fixing bug javascript for determininig Drupal path
|
12 gadi atpakaļ |
|
spficklin
|
841aaa543d
added the tripal_get_custom_schema to the tripal_core_get_chado_table_schema_function. This will allow the tripal_core_chado_insert (etc) functions to work with custom tables as well. Had to fix other places in the views integration where the tripal_get_custom_schema was being called.
|
12 gadi atpakaļ |
 Lacey Sanderson
|
6a4dce745f
Added a new API function to add the node relationship to the views integration array and made the changes to the chado relationship to node handler and the views integration code to deal with node relationships
|
12 gadi atpakaļ |
|
Lacey Sanderson
|
8626dd6023
Fixed chado_views_relationship_to_node views handler -now produces fully qualified joins
|
12 gadi atpakaļ |
|
spficklin
|
83bb80cb48
Completion of sequence handler
|
12 gadi atpakaļ |
|
spficklin
|
3627b0753a
Added a new textarea handler
|
12 gadi atpakaļ |
|
spficklin
|
424a6bca6a
Fixing merge conflict with tripal_views
|
12 gadi atpakaļ |
|
spficklin
|
5816ad9df7
added a field and filter handler for a sequence. Also fixed a fwe butgs in the gff loader, added a new function in the feature API for generating a reverse compliment
|
12 gadi atpakaļ |
|
Lacey Sanderson
|
f82bb55992
Updated tripal_views_handler_filter_select_cvterm to not use deprecated views_handler_filter_chado_select_cvterm_name
|
12 gadi atpakaļ |
|
Lacey Sanderson
|
39b875b9ef
Moved deprecated handlers into tripal_views/views/handlers/deprecated and removed them from list of registered handlers
|
12 gadi atpakaļ |
|
Lacey Sanderson
|
b7d400e451
Removed addition of nids to chado views where chado is a separate database
|
12 gadi atpakaļ |
|
Lacey Sanderson
|
7258f953f5
Merge branch '6.x-1.x' of git.drupal.org:sandbox/spficklin/1337878 into 6.x-1.x
|
12 gadi atpakaļ |
|
spficklin
|
5115e17de6
organized files in tripal_views
|
12 gadi atpakaļ |
|
spficklin
|
b98067e791
Renamed custom handlers
|
12 gadi atpakaļ |
|
Lacey Sanderson
|
47d7c0d6d3
Now handlers actually get additional arguments supplied through tripal_views
|
12 gadi atpakaļ |
|
Lacey Sanderson
|
05a027b35e
Changed unable to integrate messages to watchdog instead of drupal_set_message so that not all tables in chado need to be integrated
|
12 gadi atpakaļ |
|
Lacey Sanderson
|
2e15f7a2d5
Updated 6.x-1482618-API_for_default_views_integration branch to current 6.x-1.x branch status
|
12 gadi atpakaļ |
|
spficklin
|
c324a8440f
Merged in 6.x-6233304-Support_for_Chado_v1.2 branch and removed non-views stocks page
|
12 gadi atpakaļ |
|
spficklin
|
3efbf1ed79
Fixed coding standards problems as found by the coder module
|
12 gadi atpakaļ |
|
spficklin
|
8784673205
Fixed a merging conflict
|
12 gadi atpakaļ |
|
spficklin
|
885433ded8
Removed foreign key definitions from feature API file
|
12 gadi atpakaļ |
|
Lacey Sanderson
|
6936022808
Ensure that tripal_views integrates all chado tables described in the chado schema api -have lowest priority (10)
|
12 gadi atpakaļ |
