 Stephen Ficklin
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1de63bc866
added db_escape_table to SQL queries
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6 lat temu |
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Stephen Ficklin
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e2209ca60a
Fix for issue #572
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6 lat temu |
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Stephen Ficklin
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d4ee36803e
Fixed a undefined index warning on the schema__additional_type field and fixed a bug where a field for the organism type was being added twice
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6 lat temu |
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Stephen Ficklin
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0ca00c8031
Fixed a bug where ontologies loading during preparing don't get the cvtermpath updated and a field being added for the pub.pub_id field (same problem as the analysis fix previously committed
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6 lat temu |
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Stephen Ficklin
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6324eb4400
Fixed a bug where the operation__analysis field was being added to the analysis content type because it has an analysis_id in it. That shouldn't happen
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6 lat temu |
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Stephen Ficklin
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cfcef2df76
removed dpm
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6 lat temu |
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Stephen Ficklin
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100c608eea
Fixed merge conflict
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6 lat temu |
 Lacey Sanderson
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9490a7183e
Issue #481: fix for case 2.
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6 lat temu |
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Stephen Ficklin
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947eca28bc
Fixed merge conflict
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6 lat temu |
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Stephen Ficklin
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ccd6b1410d
Removed local__gbrowse_image field. it will go to the trpfancy_fields module
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6 lat temu |
 Lacey-Anne Sanderson
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655f00058f
Merge branch '7.x-3.x' into 432-tv3-array_desgin_field
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6 lat temu |
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Stephen Ficklin
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728e4f903f
Merge branch '7.x-3.x' into 141-tv3-field_namespace
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6 lat temu |
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Lacey Sanderson
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0651abd15c
removed dpm
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6 lat temu |
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Stephen Ficklin
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f4d1c3d941
fixes requested for PR
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6 lat temu |
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Stephen Ficklin
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c4de0e599d
Since I was adding back in broken fields, I added in the so__transcript field and fixed it
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6 lat temu |
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Stephen Ficklin
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a27b2f798a
While trying to fix this the wrong CDS problem I needed the so__cds field to work (which it now is with this commit). I also added a jbrowse viewer so I could easily see how the genes are supposed to look
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6 lat temu |
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Stephen Ficklin
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9281ae2297
Removed code that accidentaly got in from a previous PR
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6 lat temu |
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Stephen Ficklin
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ccb92b7359
Added warning messages when namespace conflicts occur with fields (i.e. the same term is used multiple times
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6 lat temu |
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Stephen Ficklin
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d34e109ac0
Added analysis field for issue #210
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6 lat temu |
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Stephen Ficklin
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019a0b491b
Resoled issue #432
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6 lat temu |
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Stephen Ficklin
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6e3941b018
Fixed the assay.operator_id column so the field works appropriately for it
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6 lat temu |
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Stephen Ficklin
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5d06f20ac2
Fixes to these fields: sep__protocol, schema__additional_type, local__contact.
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6 lat temu |
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Stephen Ficklin
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177bbaa528
Fixed a typo in the expression
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6 lat temu |
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Stephen Ficklin
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de91c6400d
This commit adds support for the protocol, assay and arraydesign tables as well as adds many new terms for chado table columns that didn't have terms associated
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6 lat temu |
 Shawna Spoor
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9096723c9a
found deprecated terms that needed to be swapped out
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6 lat temu |
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Stephen Ficklin
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76c58b2330
Fixed leftover bugs from yesterdays changes. Fixed FASTA downloaders
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6 lat temu |
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Stephen Ficklin
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630f3d99ff
Fixed issue #255
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6 lat temu |
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Stephen Ficklin
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00454a5261
Merge pull request #254 from statonlab/staton/protocol_field
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6 lat temu |
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Stephen Ficklin
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a71dfda64d
Fixed issues with the additionalType field and addressing issue #234
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7 lat temu |
 bradfordcondon
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0bc12b8379
declare protocol field in tripal_chado fields
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7 lat temu |
