 Stephen Ficklin
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ccd6b1410d
Removed local__gbrowse_image field. it will go to the trpfancy_fields module
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6 rokov pred |
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Stephen Ficklin
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a27b2f798a
While trying to fix this the wrong CDS problem I needed the so__cds field to work (which it now is with this commit). I also added a jbrowse viewer so I could easily see how the genes are supposed to look
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6 rokov pred |
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Stephen Ficklin
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5d06f20ac2
Fixes to these fields: sep__protocol, schema__additional_type, local__contact.
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6 rokov pred |
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Stephen Ficklin
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61495b0eb7
This commit adds support for the protocol, assay and arraydesign tables as well as adds many new terms for chado table columns that didn't have terms associated
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6 rokov pred |
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Stephen Ficklin
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de91c6400d
This commit adds support for the protocol, assay and arraydesign tables as well as adds many new terms for chado table columns that didn't have terms associated
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6 rokov pred |
 Shawna Spoor
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9096723c9a
found deprecated terms that needed to be swapped out
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6 rokov pred |
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Shawna Spoor
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d4ccef15fc
changes to bring the tripal chado api module files into naming standards setout in ticket 330
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6 rokov pred |
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Stephen Ficklin
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6689fe9155
Fixed URL for SWO vocab
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7 rokov pred |
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Stephen Ficklin
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b39dfbb6ae
Made fixes to the TPUB and TContact db and cv entries and added a sw_url to the vocab details
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7 rokov pred |
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Stephen Ficklin
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d370da91d6
WS working with HydraConsole, still need to add fields of content types
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7 rokov pred |
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Stephen Ficklin
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53937d9639
Updated web services to work with the HydraConsole
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7 rokov pred |
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Stephen Ficklin
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d9e87077f6
Added support for Phylogenetic Tree content type and visualization field
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7 rokov pred |
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Stephen Ficklin
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a366e1199b
Converted taxonomy importer to new TripalImporter class and added ability to import taxonomy IDs from NCBI
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7 rokov pred |
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Stephen Ficklin
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39c8baf932
A variety of small bug and text fixes
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7 rokov pred |
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Stephen Ficklin
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f853f19cb6
Changed Analysis content type to use operation:2945 term. issue #151
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7 rokov pred |
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Stephen Ficklin
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6b78d9da21
Added biological sample entity type
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7 rokov pred |
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Stephen Ficklin
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ccde805a45
Added necessary code to support the biomaterial table
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7 rokov pred |
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Stephen Ficklin
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85d98bdce0
Added an email term for contacts
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7 rokov pred |
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Stephen Ficklin
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d95e68d23d
Fixed a few minor bugs. Added the cvtermpath menu item back from Tv2 legacy code. Added an upated to fix a bad cvterm, and fixed the label for the analysis algorithm field
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7 rokov pred |
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Stephen Ficklin
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d7d64839d4
Fixed location on map field. Added a new term and hence an updatedb
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7 rokov pred |
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Stephen Ficklin
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d8f42cb817
Fixed various fields and other bugs
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7 rokov pred |
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Stephen Ficklin
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31ab1431e3
Fixing bugs with fields. Fixed major bug with field filtering
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7 rokov pred |
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Stephen Ficklin
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23f7870887
Added query/queryOrder to the annotation field. Added order_rank term with db update. Fixed bug in web services
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7 rokov pred |
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Stephen Ficklin
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6f149131f6
Adjustment to update function
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7 rokov pred |
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Stephen Ficklin
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0db17d9419
Unified the way DrupalViews and WebServices handles TripalField sub elements
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7 rokov pred |
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Stephen Ficklin
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cab8852f14
Fixed lots of bugs with web services and added new update function for tripal_chado
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7 rokov pred |
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Stephen Ficklin
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8cbdee9a06
Working on fixing caching issue with fields
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7 rokov pred |
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Stephen Ficklin
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8843ccf83d
protein sequence field is now working. Fixed relationship field to link to entities. Renamed a few new API functions
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7 rokov pred |
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Stephen Ficklin
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4889b3fae7
Fixed issue with uploader. Added support for cvterm as a base table. Fixed bugs with OBO loader
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7 rokov pred |
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Stephen Ficklin
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4a32c306d8
Renamed _bundle_create_fields and _bundle_create_instances hooks, added new CV's for the EDAM vocab
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7 rokov pred |
