Commit History

Author SHA1 Message Date
  Stephen Ficklin 030f828330 Fixed merge conflict, a bug preventing CI from working, and a bit of cleanup 6 years ago
  Bradford Condon 6f4fa9d97e Merge pull request #593 from tripal/533-tv3-ctype_timeout 6 years ago
  Stephen Ficklin 213f35c56d Fixed issue #533 6 years ago
  Stephen Ficklin d4e6adbc9f changed chado_bundle.type_id to a bigint 6 years ago
  bradford.condon 88659ab863 modify mview and update to reinstall 6 years ago
  Stephen Ficklin ccd6b1410d Removed local__gbrowse_image field. it will go to the trpfancy_fields module 6 years ago
  Stephen Ficklin a27b2f798a While trying to fix this the wrong CDS problem I needed the so__cds field to work (which it now is with this commit). I also added a jbrowse viewer so I could easily see how the genes are supposed to look 6 years ago
  Stephen Ficklin af98435132 added update function 6 years ago
  Stephen Ficklin de91c6400d This commit adds support for the protocol, assay and arraydesign tables as well as adds many new terms for chado table columns that didn't have terms associated 6 years ago
  Shawna Spoor 9096723c9a found deprecated terms that needed to be swapped out 6 years ago
  Shawna Spoor d4ccef15fc changes to bring the tripal chado api module files into naming standards setout in ticket 330 6 years ago
  Stephen Ficklin 537d50085d Added support in the CV lookup tool when vocabularies are not ontologies or are not fully loaded 6 years ago
  Stephen Ficklin 54e848aee5 Clean-ed up the cv/lookup and added a simple tree browser that could use some improvement 6 years ago
  Stephen Ficklin 6689fe9155 Fixed URL for SWO vocab 7 years ago
  Stephen Ficklin b39dfbb6ae Made fixes to the TPUB and TContact db and cv entries and added a sw_url to the vocab details 7 years ago
  Stephen Ficklin d370da91d6 WS working with HydraConsole, still need to add fields of content types 7 years ago
  Stephen Ficklin 53937d9639 Updated web services to work with the HydraConsole 7 years ago
  Stephen Ficklin d9e87077f6 Added support for Phylogenetic Tree content type and visualization field 7 years ago
  Stephen Ficklin a366e1199b Converted taxonomy importer to new TripalImporter class and added ability to import taxonomy IDs from NCBI 7 years ago
  Stephen Ficklin f853f19cb6 Changed Analysis content type to use operation:2945 term. issue #151 7 years ago
  Stephen Ficklin 6b78d9da21 Added biological sample entity type 7 years ago
  Stephen Ficklin ccde805a45 Added necessary code to support the biomaterial table 7 years ago
  Stephen Ficklin 85d98bdce0 Added an email term for contacts 7 years ago
  Stephen Ficklin d95e68d23d Fixed a few minor bugs. Added the cvtermpath menu item back from Tv2 legacy code. Added an upated to fix a bad cvterm, and fixed the label for the analysis algorithm field 7 years ago
  Stephen Ficklin d7d64839d4 Fixed location on map field. Added a new term and hence an updatedb 7 years ago
  Stephen Ficklin d5038d1901 Fixed publication properties so they are more convenient, and fixed some fields 7 years ago
  Stephen Ficklin d8f42cb817 Fixed various fields and other bugs 7 years ago
  Stephen Ficklin 31ab1431e3 Fixing bugs with fields. Fixed major bug with field filtering 7 years ago
  Stephen Ficklin 23f7870887 Added query/queryOrder to the annotation field. Added order_rank term with db update. Fixed bug in web services 7 years ago
  Stephen Ficklin 6f149131f6 Adjustment to update function 7 years ago