 mestato
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6729e33bcd
Added missing } on line 469.
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14 jaren geleden |
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mestato
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61a9834df0
Add abililty for analysis module to detect a unigene-type analysis. Previously made unigene type analyses into generic type analyses.
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14 jaren geleden |
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mestato
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442a75c16a
Fixed typo where interval was missing dollar sign.
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14 jaren geleden |
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mestato
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14dde24292
The validate function now handles three schenarios:
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14 jaren geleden |
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mestato
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4e3a64a161
Complete revision fo the cleanup method. Still deletes any orphans between node and chado_analysis in drupal but also checks for orphans without records in chado.
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14 jaren geleden |
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mestato
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60d7f0e812
Fixed internal script reference to itself from tripal_job_launcher.php to tripal_jobs_launch_multi.php.
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14 jaren geleden |
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mestato
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1b4bb14abc
Fixed error Parameter 1 to theme_tripal_analysis_analysis_table() expected to be a reference, value given in /local/sites/drupal/sites/dev.citrusgenomedb.org/modules/devel_themer/devel_themer.module on line 418. Also changed tripal_analysis_analysis_table to tripal_analysis_analysis_page to be more clear.
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14 jaren geleden |
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mestato
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86062c911f
Fixing error: call_user_func_array() expects parameter 2 to be array, string given in /local/sites/drupal/sites/dev.citrusgenomedb.org/modules/tripal_cv/charts.php on line 18.
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14 jaren geleden |
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mestato
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617b9c6f5a
This script will allow jobs to be launched from a Drupal installation with more than one Tripal site. It takes the site name as well as an admin name for that site.
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14 jaren geleden |
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mestato
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3fbd9c6159
Changed tripal_organism_table to tripal_organism_page, since it creates a page, not a table.
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14 jaren geleden |
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mestato
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fa3285fc9f
Add the correct pass by reference ampersand to return theme('tripal_library_library_table', &$libraries), as required by the new version of php.
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14 jaren geleden |
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mestato
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a957c97937
When taxonomy is assigned to a node, all analyses are included, not just one.
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14 jaren geleden |
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mestato
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9e5d97f27f
changed parse_NCBI_Blast_XML_index_version to tripal_analysis_blast_results_index_version, to be consistent with the naming of the methods of for non-index node building
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14 jaren geleden |
 spficklin
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d9d2e156a4
Fixed a bug that added error messages to the administration form for features and did not properly set the defaults for some of the fields
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15 jaren geleden |
 ccheng
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7dd59af10c
Fix a bug for parsing keg files. When there is a single quote ' in the value (e.g. 3'-deoxyribose), the SQL insertion to analysisprop fails. Single quote was replaced by html code (') before executing the SQL statement. Also, tabs in the code are replaced by spaces for proper formatting.
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15 jaren geleden |
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ccheng
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c4baa32f1c
The blast module now loads all xml files in a directory if you input a directory instead of a file name.
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15 jaren geleden |
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ccheng
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309927249d
fixed the loading problem for GO/Kegg on organism page where base_url is not '/'
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15 jaren geleden |
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ccheng
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0e7b4ee987
KEGG links to the features don't work if the base url has been rewritten.
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15 jaren geleden |
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ccheng
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68577d8681
Fixing a bug for interpro results. Interpro box should not display results that do not belong to the cvterm 'analysis_interpro_output_hit'
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15 jaren geleden |
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ccheng
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83d3143980
When uploading a blast xml file, tripal now take the first word of <Iteration_query-def> tag to match the chado feature uniquename, instead of using the whole content of the tag for matching.
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15 jaren geleden |
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ccheng
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254240c41f
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15 jaren geleden |
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ccheng
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22991afcfa
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15 jaren geleden |
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spficklin
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721b62b65c
Added an option of the feature admin page to disable the feature summary box on the organism page.
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15 jaren geleden |
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spficklin
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c57ba808f3
Fixed a bug with the display of the feature summary charts and created a setting on the feature administration page to allow turning off of the feature summary.
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15 jaren geleden |
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spficklin
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b693c1a6fc
Initial import of version 0.2
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15 jaren geleden |
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spficklin
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4900c1976e
Initial import of version 2.0
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15 jaren geleden |
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spficklin
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24ad506b36
Initial import of version 0.2
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15 jaren geleden |
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spficklin
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1d61d9b128
Initial import of version 0.2
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15 jaren geleden |
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spficklin
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e4c92feeb9
Initial import of version 0.2
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15 jaren geleden |
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spficklin
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01c437a68f
Initial import of version 0.2
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15 jaren geleden |
