 Stephen Ficklin
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678409551d
Adjusted defaultcv and defaultdb
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6 gadi atpakaļ |
 Shawna Spoor
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f6586cdf7f
update to fix a flipped term name and id
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6 gadi atpakaļ |
|
Shawna Spoor
|
f059c52de7
fixed the error reporting when trying to write to the obo temp table
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6 gadi atpakaļ |
|
Shawna Spoor
|
29e3c37716
fix for the double colon issue and an update to speed up processing by writing terms to the tripalobotemp table that have been looked up remotely
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6 gadi atpakaļ |
 Bradford Condon
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af332e12a8
fix for issue 501
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6 gadi atpakaļ |
|
Shawna Spoor
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f475a74a00
warning message of slow load when lookups required
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6 gadi atpakaļ |
|
Shawna Spoor
|
2ea7e8eb8d
one last fix to address the random null name exceptions that were getting thrown by the plant trait ontology
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6 gadi atpakaļ |
|
Shawna Spoor
|
87fd46f30c
still testing this fix to see if it address the slow load time
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6 gadi atpakaļ |
|
Shawna Spoor
|
c8a0e23284
fix for the tripal contact obo that addresses problem on my local
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6 gadi atpakaļ |
|
Shawna Spoor
|
a4514e1f9a
this updated loader has loaded the plant trait ontology the GO and the plana ontology
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6 gadi atpakaļ |
|
Shawna Spoor
|
3a4fd90d77
functional lookup in ebi for term ids passed as names and is_a but still not working for plant trait ontology because of odd is_a implementation within it
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6 gadi atpakaļ |
|
Shawna Spoor
|
1a35508841
adding the test for the id being a reference and handling appropriately
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6 gadi atpakaļ |
|
Shawna Spoor
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9096723c9a
found deprecated terms that needed to be swapped out
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7 gadi atpakaļ |
|
Shawna Spoor
|
d4ccef15fc
changes to bring the tripal chado api module files into naming standards setout in ticket 330
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7 gadi atpakaļ |
|
Shawna Spoor
|
a4caea07f8
one last note to self I had left in needed to come out
|
7 gadi atpakaļ |
|
Shawna Spoor
|
ca9d2aaaa8
removing a missed debug statement
|
7 gadi atpakaļ |
|
Shawna Spoor
|
10c1c605e9
changes to cvtermpathupdate to allow for goslim to load and an update to the oboebi lookup functionality so that edam does not cause a problem and one small change to a tripal drush command to apply permissions to content types
|
7 gadi atpakaļ |
|
Shawna Spoor
|
b709b1739c
moved the check of the cv from parse to processterm because it makes more sense there
|
7 gadi atpakaļ |
|
Shawna Spoor
|
fe6ff8809c
fixed the errors and closed an unclosed open file stream
|
7 gadi atpakaļ |
|
Shawna Spoor
|
e570ab3b51
initial commit with ebi lookup for terms
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7 gadi atpakaļ |
|
Shawna Spoor
|
bda156ab24
added the ebi ontology search call for the load if no default namespace is provided moving on to the loading of terms and typedefs now.
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7 gadi atpakaļ |
 dsenalik
|
76f04f941d
Fix minor typos 2
|
7 gadi atpakaļ |
|
Stephen Ficklin
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54e848aee5
Clean-ed up the cv/lookup and added a simple tree browser that could use some improvement
|
7 gadi atpakaļ |
|
Shawna Spoor
|
69479178c9
initial commit with fixes to the obo loader to allow for file references
|
7 gadi atpakaļ |
|
Stephen Ficklin
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f6881ab794
Reorganized the vocabulary loader links and consolidated them into a single location
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7 gadi atpakaļ |
|
Stephen Ficklin
|
eb2eed105b
Fixed bug with transation not committing beetween OBO term loading and cvtermpath loading
|
7 gadi atpakaļ |
|
Shawna Spoor
|
4ed248e606
destroying the transaction to try and help speed
|
7 gadi atpakaļ |
|
Stephen Ficklin
|
39c8baf932
A variety of small bug and text fixes
|
7 gadi atpakaļ |
|
Stephen Ficklin
|
cdaacaeace
Fixed issue #145
|
7 gadi atpakaļ |
|
Stephen Ficklin
|
d95e68d23d
Fixed a few minor bugs. Added the cvtermpath menu item back from Tv2 legacy code. Added an upated to fix a bad cvterm, and fixed the label for the analysis algorithm field
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7 gadi atpakaļ |
