 Stephen Ficklin
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030f828330
Fixed merge conflict, a bug preventing CI from working, and a bit of cleanup
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%!s(int64=6) %!d(string=hai) anos |
 Bradford Condon
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6f4fa9d97e
Merge pull request #593 from tripal/533-tv3-ctype_timeout
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%!s(int64=6) %!d(string=hai) anos |
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Stephen Ficklin
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213f35c56d
Fixed issue #533
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%!s(int64=6) %!d(string=hai) anos |
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Stephen Ficklin
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d4e6adbc9f
changed chado_bundle.type_id to a bigint
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%!s(int64=6) %!d(string=hai) anos |
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bradford.condon
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88659ab863
modify mview and update to reinstall
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%!s(int64=6) %!d(string=hai) anos |
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Stephen Ficklin
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ccd6b1410d
Removed local__gbrowse_image field. it will go to the trpfancy_fields module
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%!s(int64=6) %!d(string=hai) anos |
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Stephen Ficklin
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a27b2f798a
While trying to fix this the wrong CDS problem I needed the so__cds field to work (which it now is with this commit). I also added a jbrowse viewer so I could easily see how the genes are supposed to look
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%!s(int64=6) %!d(string=hai) anos |
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Stephen Ficklin
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af98435132
added update function
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%!s(int64=6) %!d(string=hai) anos |
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Stephen Ficklin
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de91c6400d
This commit adds support for the protocol, assay and arraydesign tables as well as adds many new terms for chado table columns that didn't have terms associated
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%!s(int64=6) %!d(string=hai) anos |
 Shawna Spoor
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9096723c9a
found deprecated terms that needed to be swapped out
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%!s(int64=6) %!d(string=hai) anos |
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Shawna Spoor
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d4ccef15fc
changes to bring the tripal chado api module files into naming standards setout in ticket 330
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%!s(int64=6) %!d(string=hai) anos |
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Stephen Ficklin
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537d50085d
Added support in the CV lookup tool when vocabularies are not ontologies or are not fully loaded
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%!s(int64=6) %!d(string=hai) anos |
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Stephen Ficklin
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54e848aee5
Clean-ed up the cv/lookup and added a simple tree browser that could use some improvement
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%!s(int64=6) %!d(string=hai) anos |
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Stephen Ficklin
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6689fe9155
Fixed URL for SWO vocab
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%!s(int64=7) %!d(string=hai) anos |
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Stephen Ficklin
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b39dfbb6ae
Made fixes to the TPUB and TContact db and cv entries and added a sw_url to the vocab details
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%!s(int64=7) %!d(string=hai) anos |
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Stephen Ficklin
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d370da91d6
WS working with HydraConsole, still need to add fields of content types
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%!s(int64=7) %!d(string=hai) anos |
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Stephen Ficklin
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53937d9639
Updated web services to work with the HydraConsole
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%!s(int64=7) %!d(string=hai) anos |
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Stephen Ficklin
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d9e87077f6
Added support for Phylogenetic Tree content type and visualization field
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%!s(int64=7) %!d(string=hai) anos |
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Stephen Ficklin
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a366e1199b
Converted taxonomy importer to new TripalImporter class and added ability to import taxonomy IDs from NCBI
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%!s(int64=7) %!d(string=hai) anos |
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Stephen Ficklin
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f853f19cb6
Changed Analysis content type to use operation:2945 term. issue #151
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%!s(int64=7) %!d(string=hai) anos |
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Stephen Ficklin
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6b78d9da21
Added biological sample entity type
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%!s(int64=7) %!d(string=hai) anos |
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Stephen Ficklin
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ccde805a45
Added necessary code to support the biomaterial table
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%!s(int64=7) %!d(string=hai) anos |
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Stephen Ficklin
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85d98bdce0
Added an email term for contacts
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%!s(int64=7) %!d(string=hai) anos |
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Stephen Ficklin
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d95e68d23d
Fixed a few minor bugs. Added the cvtermpath menu item back from Tv2 legacy code. Added an upated to fix a bad cvterm, and fixed the label for the analysis algorithm field
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%!s(int64=7) %!d(string=hai) anos |
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Stephen Ficklin
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d7d64839d4
Fixed location on map field. Added a new term and hence an updatedb
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%!s(int64=7) %!d(string=hai) anos |
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Stephen Ficklin
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d5038d1901
Fixed publication properties so they are more convenient, and fixed some fields
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%!s(int64=7) %!d(string=hai) anos |
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Stephen Ficklin
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d8f42cb817
Fixed various fields and other bugs
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%!s(int64=7) %!d(string=hai) anos |
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Stephen Ficklin
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31ab1431e3
Fixing bugs with fields. Fixed major bug with field filtering
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%!s(int64=7) %!d(string=hai) anos |
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Stephen Ficklin
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23f7870887
Added query/queryOrder to the annotation field. Added order_rank term with db update. Fixed bug in web services
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%!s(int64=7) %!d(string=hai) anos |
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Stephen Ficklin
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6f149131f6
Adjustment to update function
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%!s(int64=7) %!d(string=hai) anos |
