 spficklin
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47dcfaa04c
Bug fixes for various modules and themes
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14 lat temu |
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spficklin
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5ac6843b37
Fixed bugs and some themeing, and added support for parsing query matches in the blast analysis.
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14 lat temu |
 ccheng
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318feef549
fix a bug that analysis_type wasn't picked up correctly when syncing.
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14 lat temu |
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spficklin
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05d50175b0
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14 lat temu |
 laceysanderson
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0f66f0150d
Added documentation to tripal_core, tripal_analysis, tripal_contact, tripal_stock for the new Doxygen API Site
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14 lat temu |
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spficklin
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c616bca1ea
Add analysis requirement to GFF loader
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14 lat temu |
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laceysanderson
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a0a61c372e
Made administration paths consistent and added module descriptions/help to new tripal admins for all modules except feature
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14 lat temu |
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laceysanderson
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0df9939cce
Updated tripal API to use hooks for table description and retrieve only the table description needed by calling module_invoke_all. Also added foreign key descriptions to tripal_stock.api.inc:all, tripal_cv.api.inc:cvterm, tripal_db.api.inc:dbxref, tripal_analysis.api.inc:all, tripal_feature.api.inc:feature, tripal_organism.api.inc:all, tripal_contact.api.inc:all
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14 lat temu |
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laceysanderson
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3cfd7ba884
Added Views Integration for tripal_analysis
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14 lat temu |
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spficklin
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3ab974ee52
Added a new tripal_set_active_db function to replace Drupal's set_active_db function. This function allows Tripal to use a chado database in an external location or a chado database within another schema within the Drupal database. This keeps backwards compatibility with older versions of Tripal.
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14 lat temu |
 mestato
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832463e97e
The syncing method now tries to figure out what type of analysis is being synchronized by checking the cvterm "analysis_type". This cvterm should be added to each analysis by the individual analysis modules or the user if the upload is directly into chado. The value for this cvterm should reflect the name of the module, "tripal_analysis_unigene", "tripal_analysis_blast", etc.
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14 lat temu |
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mestato
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6729e33bcd
Added missing } on line 469.
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14 lat temu |
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mestato
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61a9834df0
Add abililty for analysis module to detect a unigene-type analysis. Previously made unigene type analyses into generic type analyses.
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14 lat temu |
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mestato
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442a75c16a
Fixed typo where interval was missing dollar sign.
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14 lat temu |
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mestato
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4e3a64a161
Complete revision fo the cleanup method. Still deletes any orphans between node and chado_analysis in drupal but also checks for orphans without records in chado.
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14 lat temu |
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mestato
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1b4bb14abc
Fixed error Parameter 1 to theme_tripal_analysis_analysis_table() expected to be a reference, value given in /local/sites/drupal/sites/dev.citrusgenomedb.org/modules/devel_themer/devel_themer.module on line 418. Also changed tripal_analysis_analysis_table to tripal_analysis_analysis_page to be more clear.
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14 lat temu |
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spficklin
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6590ead491
Initial import of version 0.2
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15 lat temu |
