 spficklin
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8a898014b8
Renamed branch from 7.x-1.x to 7.x-2.x. Also merged bug fixes from 6.x-1.x
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11 rokov pred |
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spficklin
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9d7bf94295
Changed chado_get_id_for_node API call to accept nid as second parameter and fixed all calls in all modules. Organism module can now sync, edit, upload image for an organism
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11 rokov pred |
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spficklin
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9530be9e77
Chado installer is fully functional in Drupla 7
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11 rokov pred |
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spficklin
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388824ca96
Added feature_featurepos template
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11 rokov pred |
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spficklin
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8c6bc34363
Added feature phenotype template
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11 rokov pred |
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spficklin
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1156b83efb
Added support for 'organism=genus:speices' attribute for importing GFF files
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11 rokov pred |
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spficklin
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57e4e62025
Changed URL path for sequence retrieval
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12 rokov pred |
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spficklin
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079f9f0375
Moved form elements from views module to Tripal core and updated seq extract form to use the file upload combo element. Also renamed include files to have a .inc extension rather than a .php extension in the core moduel
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12 rokov pred |
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spficklin
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937df20c85
Continued development of seq_extract form
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12 rokov pred |
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spficklin
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b87e95f9af
Added AHAH-enabled form for sequence retrieveal
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12 rokov pred |
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spficklin
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1400425db6
Added configuration page to tripal_pub module
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12 rokov pred |
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spficklin
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5abfa152c7
Changed feature_add_synonmys function to not use a space, but a carriage return
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12 rokov pred |
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spficklin
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2756a7cce1
Added brackets around all table names in SQL statements throughout all of Tripal
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12 rokov pred |
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spficklin
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fc8149faec
Updated the GFF loader to add a date timestamp to the uniquename if none is provided in the GFF file. This ensures that the value will always be unique. Also, updated the GFF file to use the landmark_type provided by the user to look for the landmark if one is provided. Also changed the GFF loader so that it will recognize an entry for landmark using either the uniquename or the name
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12 rokov pred |
 Lacey Sanderson
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fca91cc322
Added more doxygen commenting -there wasn't any groups for the bulk loader or tripal views
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12 rokov pred |
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spficklin
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72bf7c5a46
Removed references to old tripal_feature_relagg table
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12 rokov pred |
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spficklin
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c423725e2a
Updated Doxygen comments
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12 rokov pred |
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spficklin
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bf802025f2
Added support for paging of chado queries, and adjusted support for genotype templates
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12 rokov pred |
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spficklin
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c783298b56
Fixed bug in feature/XXX menu callback
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12 rokov pred |
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spficklin
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9964a101c6
Removed preprocess function that accidentally got incorporated but was for a custom site. Also removed api function in organism module that didn't fit
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12 rokov pred |
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spficklin
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fb42852fa2
Reorganization of functions into api, includes and theme files to make all modules consistent
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12 rokov pred |
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spficklin
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d2b7b59b9e
Fixed issues with the library module
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12 rokov pred |
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spficklin
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cf8e652b36
Fixed GFF loader for deleting entries in a GFF file. It was broken
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12 rokov pred |
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spficklin
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b6444c78ad
Debugging Tripal CV module and created API function for feature relationships
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12 rokov pred |
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spficklin
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d7e679c118
Removed match_part from parent/child variables in the alignment preprocess function
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12 rokov pred |
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spficklin
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4560a2dce9
Made some additional bug fixes and improvements to the GFF loader
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12 rokov pred |
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spficklin
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8924d71248
Added support to the GFF loader for specifying target species and tyeps
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12 rokov pred |
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spficklin
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48631d702c
Fixed a bug when registering a new analysis module. If the module already existed in the table it threw an error. Now it checks first. Also fixed bug with chado_query to not add a 'chado.' prefix in the 'substring' psql function. Also updated the tripal_core_chado_update module to return the primary key if a single record is updated and if the return_record option is given.
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12 rokov pred |
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spficklin
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0b674f6e64
Removed old relationship aggregator table and code. We don't use it.
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12 rokov pred |
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spficklin
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403d2803cf
Fixed issue #1661530
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12 rokov pred |
