 laceysanderson
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8e180d5063
tripal_core_set_chado_version() now returns the version of a chado db external to drupal
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12 years ago |
 spficklin
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b7e66e10b5
Foreign key constraints are now created when a new custom table is added. Before the foreign key details were used for views integration and bulk loader but there were no actual FK relationships in the database. Now there are.
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12 years ago |
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spficklin
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2a84591eed
Fixed bug when checking unique constraint on insert. If a value is not provided but there is a default then it will use the default value
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12 years ago |
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spficklin
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fdb7f2ee8d
Added new type to chado_execute_prepared()
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12 years ago |
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spficklin
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e6a9227107
Added new type to chado_execute_prepared()
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12 years ago |
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Stephen Ficklin
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a798519522
Fixed slowness bugs in bulk loader
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12 years ago |
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spficklin
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b60dcb4f26
Fixed many issues that cause memory leaks in the core and the bulk loader
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12 years ago |
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spficklin
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88c5a5ee89
Speedup optimizations to get bulk loader to work faster. Slowness problems were caused by core modules that set search_path and checked for existence of chado database on every query
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12 years ago |
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spficklin
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ff97c79d38
Fixed bug in loader
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12 years ago |
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spficklin
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7e587c447d
updates to loader, fixed type in core
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12 years ago |
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spficklin
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c3719190b6
Added a not fail option when a record is of type 'select' in the bulk loader. Altered the bulk loader to substitute primary key values into data table values so that there are less FK recursive calls. Added a new option to the tripal_core_chado_select to let someone just check if the record exists only using the unique constraint values.
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12 years ago |
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spficklin
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841aaa543d
added the tripal_get_custom_schema to the tripal_core_get_chado_table_schema_function. This will allow the tripal_core_chado_insert (etc) functions to work with custom tables as well. Had to fix other places in the views integration where the tripal_get_custom_schema was being called.
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12 years ago |
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spficklin
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ecd03c3e16
Added an interface for creating custom tables to the Tripa UI
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12 years ago |
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spficklin
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2840b98e85
All node types (except stock) have a function to cleanup orphaned nodes but it wasn't complete for some. A new core API function was created that all modules with node types can use to clean up orphaned nodes. Also, the drush trpjob-run command was fixed so that a username must be provided to run the job
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12 years ago |
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spficklin
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ef9e217d60
Fixed a bug in FK statement name construction in tripal_core_chado_[select/insert/update/delete]
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12 years ago |
 Lacey Sanderson
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3f0763b237
Made foreign key statement names include number of args to make unique for bulk loader
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12 years ago |
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Lacey Sanderson
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fb2790a90e
Added tripal_core_chado_prepare and tripal_core_chado_execute_prepared. Also added checking to ensure all arguments for a prepared statement are present before executing and added arguement comparison before saying a statement is already prepared
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12 years ago |
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spficklin
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38daa52d75
Re-arranged file structure for tripal_analysis and tripal_cv. Also fixed but in tripal core
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12 years ago |
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spficklin
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48f972cd1b
Bug fixes
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12 years ago |
|
spficklin
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feb56cc3c2
Oops left in debugging code
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12 years ago |
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spficklin
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76cea3664f
Fixed some memory leaks in GFF loader and in the Core API
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12 years ago |
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spficklin
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094ec69bde
Added prepared statements for tripal_core_chado_update and fixed it so that queiries for FK, UQ and PK constraints use prepared statements too. Altered GFF loader so that all queries use prepared statements
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12 years ago |
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Lacey Sanderson
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31d173505b
Changed chado_query to no longer touch and changed chado_install.php to use chado_query
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12 years ago |
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spficklin
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af9610a24e
Fixed chado installer to give more noticeable failure warning, and to continue on failure
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12 years ago |
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spficklin
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20ad1ec24a
Updated Chado version checking to recognize an 'effective version', or just the version to the tenth's place.
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12 years ago |
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spficklin
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47a0862d5a
Added warning message if Drupal version is not v1.11 or v1.2. Tripal won't work without one of these versions
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12 years ago |
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spficklin
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c04935cb5b
Added warning message if Drupal version is not v1.11 or v1.2. Tripal won't work without one of these versions
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12 years ago |
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spficklin
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422684b8d2
Added warning message if Drupal version is not v1.11 or v1.2. Tripal won't work without one of these versions
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12 years ago |
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spficklin
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5816ad9df7
added a field and filter handler for a sequence. Also fixed a fwe butgs in the gff loader, added a new function in the feature API for generating a reverse compliment
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12 years ago |
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spficklin
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b98067e791
Renamed custom handlers
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12 years ago |
