 spficklin
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1156b83efb
Added support for 'organism=genus:speices' attribute for importing GFF files
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11 سال پیش |
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spficklin
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57e4e62025
Changed URL path for sequence retrieval
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12 سال پیش |
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spficklin
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079f9f0375
Moved form elements from views module to Tripal core and updated seq extract form to use the file upload combo element. Also renamed include files to have a .inc extension rather than a .php extension in the core moduel
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12 سال پیش |
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spficklin
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937df20c85
Continued development of seq_extract form
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12 سال پیش |
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spficklin
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b87e95f9af
Added AHAH-enabled form for sequence retrieveal
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12 سال پیش |
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spficklin
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1400425db6
Added configuration page to tripal_pub module
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12 سال پیش |
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spficklin
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5abfa152c7
Changed feature_add_synonmys function to not use a space, but a carriage return
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12 سال پیش |
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spficklin
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2756a7cce1
Added brackets around all table names in SQL statements throughout all of Tripal
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12 سال پیش |
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spficklin
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fc8149faec
Updated the GFF loader to add a date timestamp to the uniquename if none is provided in the GFF file. This ensures that the value will always be unique. Also, updated the GFF file to use the landmark_type provided by the user to look for the landmark if one is provided. Also changed the GFF loader so that it will recognize an entry for landmark using either the uniquename or the name
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12 سال پیش |
 Lacey Sanderson
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fca91cc322
Added more doxygen commenting -there wasn't any groups for the bulk loader or tripal views
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12 سال پیش |
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spficklin
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72bf7c5a46
Removed references to old tripal_feature_relagg table
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12 سال پیش |
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spficklin
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c423725e2a
Updated Doxygen comments
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12 سال پیش |
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spficklin
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bf802025f2
Added support for paging of chado queries, and adjusted support for genotype templates
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12 سال پیش |
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spficklin
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c783298b56
Fixed bug in feature/XXX menu callback
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12 سال پیش |
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spficklin
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9964a101c6
Removed preprocess function that accidentally got incorporated but was for a custom site. Also removed api function in organism module that didn't fit
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12 سال پیش |
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spficklin
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fb42852fa2
Reorganization of functions into api, includes and theme files to make all modules consistent
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12 سال پیش |
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spficklin
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d2b7b59b9e
Fixed issues with the library module
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12 سال پیش |
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spficklin
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cf8e652b36
Fixed GFF loader for deleting entries in a GFF file. It was broken
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12 سال پیش |
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spficklin
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b6444c78ad
Debugging Tripal CV module and created API function for feature relationships
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12 سال پیش |
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spficklin
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d7e679c118
Removed match_part from parent/child variables in the alignment preprocess function
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12 سال پیش |
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spficklin
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4560a2dce9
Made some additional bug fixes and improvements to the GFF loader
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12 سال پیش |
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spficklin
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8924d71248
Added support to the GFF loader for specifying target species and tyeps
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12 سال پیش |
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spficklin
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48631d702c
Fixed a bug when registering a new analysis module. If the module already existed in the table it threw an error. Now it checks first. Also fixed bug with chado_query to not add a 'chado.' prefix in the 'substring' psql function. Also updated the tripal_core_chado_update module to return the primary key if a single record is updated and if the return_record option is given.
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12 سال پیش |
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spficklin
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0b674f6e64
Removed old relationship aggregator table and code. We don't use it.
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12 سال پیش |
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spficklin
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403d2803cf
Fixed issue #1661530
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12 سال پیش |
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spficklin
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9bb94c3748
Fixed issue #1699022. Took out all code that tried to distinguish a revision.
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12 سال پیش |
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spficklin
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7c95f3d958
Fixed Issue #1809994. The FASTA loader now correctly loads relationships and external DB referneces. Also, removed the requirement that residues have only IUPAC characters. The check incorrectly forgot protein characters, but also sometimes there may be additional characters and we shouldn't limit the field
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12 سال پیش |
 ficklin
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96856a97d5
Added template for feature_cvterm recoords
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12 سال پیش |
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spficklin
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5fcf1c8645
Oops fixed type
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12 سال پیش |
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spficklin
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a81383d8cf
Added functionality similar to GBrowse. Users can access any feature with the following URL http://<your site>/feature/<name>. Tripal will recoginze the URL, search for a feature of that name, uniquename or synonym and redirect to the page. If there are more than one feature that matches, a table with all matches will be shown and the user can select which one they want to see
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12 سال پیش |
