 spficklin
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cd87d5a56a
Fixed Drupal formatting standards
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%!s(int64=12) %!d(string=hai) anos |
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Stephen Ficklin
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a28f785f25
Had to rollback a fix that removed memory leaks, but it casued other problems
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%!s(int64=12) %!d(string=hai) anos |
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spficklin
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2840b98e85
All node types (except stock) have a function to cleanup orphaned nodes but it wasn't complete for some. A new core API function was created that all modules with node types can use to clean up orphaned nodes. Also, the drush trpjob-run command was fixed so that a username must be provided to run the job
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%!s(int64=12) %!d(string=hai) anos |
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spficklin
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c324a8440f
Merged in 6.x-6233304-Support_for_Chado_v1.2 branch and removed non-views stocks page
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%!s(int64=12) %!d(string=hai) anos |
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spficklin
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06ed7b835c
Removed old organism and analyses lists as this duplicates are default views and views is easy enough to install if someone wants the list
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%!s(int64=12) %!d(string=hai) anos |
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spficklin
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bc6d1b4c41
Fixed revisions in update
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%!s(int64=12) %!d(string=hai) anos |
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Stephen Ficklin
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1dae1ea23a
Revisions weren't working properly for organisms. Fixed it
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%!s(int64=12) %!d(string=hai) anos |
 Pubudu Basnayaka
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aaed62d7f5
Tripal Organism adheres to Drupal coding standards
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%!s(int64=12) %!d(string=hai) anos |
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Pubudu Basnayaka
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e6e051e53d
Tripal Organism now adhere to Drupal coding standards
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%!s(int64=12) %!d(string=hai) anos |
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spficklin
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af2ff151e6
Moved most extensions out. Moved base modules out of 'base' directory
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%!s(int64=13) %!d(string=hai) anos |
 alexgl
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c5d67e59c6
moving more modules into base and extensions respectively
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%!s(int64=13) %!d(string=hai) anos |
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spficklin
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fb76301d42
Fixed hook_access for all modules. This change supports use of other access permission modules, such as "node privacy by role"
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%!s(int64=13) %!d(string=hai) anos |
 ccheng
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9e1584f598
Update permission checks
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%!s(int64=13) %!d(string=hai) anos |
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ccheng
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047eb8a0e8
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%!s(int64=13) %!d(string=hai) anos |
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spficklin
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95e1b150fc
Fixed multiple things including the following
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%!s(int64=13) %!d(string=hai) anos |
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spficklin
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f3f1671a51
Fixed a bug in the organism module where it wouldn't sync the organism
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%!s(int64=13) %!d(string=hai) anos |
 laceysanderson
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e0500f0746
Tripal: Added documentation
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%!s(int64=14) %!d(string=hai) anos |
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spficklin
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b90ea5955d
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%!s(int64=14) %!d(string=hai) anos |
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spficklin
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0dd8d23333
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%!s(int64=14) %!d(string=hai) anos |
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spficklin
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94ef4739bb
Fixes to templates and update to GFF3 loader
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%!s(int64=14) %!d(string=hai) anos |
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spficklin
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740bec5016
Various bug fixes and theming adjustments
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%!s(int64=14) %!d(string=hai) anos |
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spficklin
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5ac6843b37
Fixed bugs and some themeing, and added support for parsing query matches in the blast analysis.
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%!s(int64=14) %!d(string=hai) anos |
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spficklin
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eff151490d
More work on theming for analysis go, organism and feature
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%!s(int64=14) %!d(string=hai) anos |
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spficklin
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bcb9dedeb5
Continued fixes to the theming
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%!s(int64=14) %!d(string=hai) anos |
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laceysanderson
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1670658503
Added description details to organism details page admin/tripal/tripal_organism
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%!s(int64=14) %!d(string=hai) anos |
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laceysanderson
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a0a61c372e
Made administration paths consistent and added module descriptions/help to new tripal admins for all modules except feature
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%!s(int64=14) %!d(string=hai) anos |
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spficklin
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4c62dd3793
:
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%!s(int64=14) %!d(string=hai) anos |
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laceysanderson
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248c5d815c
Added Views Integration for tripal_organism & tripal_library
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%!s(int64=14) %!d(string=hai) anos |
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spficklin
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3ab974ee52
Added a new tripal_set_active_db function to replace Drupal's set_active_db function. This function allows Tripal to use a chado database in an external location or a chado database within another schema within the Drupal database. This keeps backwards compatibility with older versions of Tripal.
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%!s(int64=14) %!d(string=hai) anos |
 mestato
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3fbd9c6159
Changed tripal_organism_table to tripal_organism_page, since it creates a page, not a table.
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%!s(int64=14) %!d(string=hai) anos |
