 spficklin
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2840b98e85
All node types (except stock) have a function to cleanup orphaned nodes but it wasn't complete for some. A new core API function was created that all modules with node types can use to clean up orphaned nodes. Also, the drush trpjob-run command was fixed so that a username must be provided to run the job
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12 vuotta sitten |
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spficklin
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ac7081027a
Removed the feature browser from the library and anslysis pages.
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12 vuotta sitten |
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spficklin
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138637d6eb
Fixed bug in annotated feature display
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12 vuotta sitten |
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spficklin
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91184c553b
Fixed the get sequence function to work with Postgres 8.4 and fixed the annotated feature so that it can properly display overlapping parts and show the sequence in reverse complement if on the reverse strand
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12 vuotta sitten |
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spficklin
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b4ad2e1b5d
combined object and subject relationships into a single template
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12 vuotta sitten |
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spficklin
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48f972cd1b
Bug fixes
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12 vuotta sitten |
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spficklin
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320e44d2c2
Fixed parsing bug in GFF loader. Moved all include files into an include directory
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12 vuotta sitten |
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spficklin
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7b8f930310
Fixed parsing bug in GFF loader. Moved all include files into an include directory
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12 vuotta sitten |
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spficklin
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3efbf1ed79
Fixed coding standards problems as found by the coder module
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12 vuotta sitten |
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spficklin
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1d3c11b6dd
Fixed another problem with alignments
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12 vuotta sitten |
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Stephen Ficklin
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36c67c6024
Fixed mistake in matched feature preprocess function
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12 vuotta sitten |
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spficklin
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0778b71d77
Updating main branch with fixes to feature moduel for alignments. Also fixed but in Core API
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12 vuotta sitten |
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Stephen Ficklin
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cfff5f8594
Merge branch '6.x-0.4-dev' of git.drupal.org:sandbox/spficklin/1337878 into 6.x-0.4-dev
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12 vuotta sitten |
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Stephen Ficklin
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26f611ee42
Fixed watchdog calls with wrong module name
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12 vuotta sitten |
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Stephen Ficklin
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e408d9e4a3
fixed some errors where objects were not first created
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12 vuotta sitten |
 Lacey Sanderson
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0728c08b4a
Merge branch '6.x-0.4-dev' of git.drupal.org:sandbox/spficklin/1337878 into 6.x-0.4-dev
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12 vuotta sitten |
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Lacey Sanderson
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63c8406e58
Coding Standards: Final cleanup for tripal_feature; added @coder-ignore for errors to be ignored
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12 vuotta sitten |
 Pubudu Basnayaka
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688d511b07
Tripal Feature adheres to Drupal coding standards
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12 vuotta sitten |
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Pubudu Basnayaka
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2ff2ef1ab9
Tripal Feature adheres to Drupal coding standards
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12 vuotta sitten |
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Pubudu Basnayaka
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35583d0246
Tripal Feature adheres to Drupal coding standards
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12 vuotta sitten |
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Stephen Ficklin
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21f247f98e
Added functionality to the Feature Summary Report on the organism page so that site admins can customize which terms appear in the list and rename the terms to make them more legible. By default the report behaves the same
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12 vuotta sitten |
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spficklin
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af2ff151e6
Moved most extensions out. Moved base modules out of 'base' directory
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13 vuotta sitten |
 alexgl
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c5d67e59c6
moving more modules into base and extensions respectively
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13 vuotta sitten |
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spficklin
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838e168b2f
Fixed the bug where the edit drop down box on the feature edit/create form wasn't getting populated with reasonable values.
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13 vuotta sitten |
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spficklin
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27a3268743
Temporary fix for populating the feature type drop down when editing a feature. It wasn't getting populated.
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13 vuotta sitten |
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laceysanderson
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b645703ffc
Tripal: Bug Fix to feature coloured sequence code (tripal_feature.module Ln1300)
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13 vuotta sitten |
 ccheng
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9e1584f598
Update permission checks
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13 vuotta sitten |
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ccheng
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3b01863505
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13 vuotta sitten |
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spficklin
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7ea86c8786
Fixed FASTA loader, had several bugs and updated the alignment template
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13 vuotta sitten |
|
spficklin
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57620cb7a1
Fixed bug in feature module when deleting orphaned features it would incorrectly remove non-orphaned features
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13 vuotta sitten |
