 spficklin
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ed0dad3cf7
Provided some code clenup for the analysis module, added new API functions to the tripal_feature module, and added new case checking to some of the API calls in the Tripal core
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%!s(int64=12) %!d(string=hai) anos |
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spficklin
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c423725e2a
Updated Doxygen comments
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%!s(int64=12) %!d(string=hai) anos |
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spficklin
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fb42852fa2
Reorganization of functions into api, includes and theme files to make all modules consistent
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%!s(int64=12) %!d(string=hai) anos |
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spficklin
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48631d702c
Fixed a bug when registering a new analysis module. If the module already existed in the table it threw an error. Now it checks first. Also fixed bug with chado_query to not add a 'chado.' prefix in the 'substring' psql function. Also updated the tripal_core_chado_update module to return the primary key if a single record is updated and if the return_record option is given.
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%!s(int64=12) %!d(string=hai) anos |
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spficklin
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403d2803cf
Fixed issue #1661530
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%!s(int64=12) %!d(string=hai) anos |
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spficklin
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42fe28540f
Fixed issue #1712422. Changed all Chado querie to use chado_query() rather than db_query()
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%!s(int64=12) %!d(string=hai) anos |
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spficklin
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15866040bc
Fixed bug 1896914. Tripal will now disallow creation or update of analysis with the same name or unique constraint as another.
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%!s(int64=12) %!d(string=hai) anos |
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spficklin
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bce50f164a
Fixed bug with drupal_eval and tripal_core_exclude_type_by_default hook. If a quote was present in the string being evaluated it would create errors
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%!s(int64=12) %!d(string=hai) anos |
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spficklin
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073b43e3e4
Added additional instructions to analysis form. Fixed typo in feature module
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%!s(int64=12) %!d(string=hai) anos |
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spficklin
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cd87d5a56a
Fixed Drupal formatting standards
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%!s(int64=12) %!d(string=hai) anos |
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spficklin
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2840b98e85
All node types (except stock) have a function to cleanup orphaned nodes but it wasn't complete for some. A new core API function was created that all modules with node types can use to clean up orphaned nodes. Also, the drush trpjob-run command was fixed so that a username must be provided to run the job
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%!s(int64=12) %!d(string=hai) anos |
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spficklin
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3a75d7689b
Added a new analyses resource item for features. It lists the analysis a feature is a part of
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%!s(int64=12) %!d(string=hai) anos |
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spficklin
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67b3d34903
Don't remember what was changed in CV.api.in, but made a change to insert form for an analysis
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%!s(int64=12) %!d(string=hai) anos |
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spficklin
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38daa52d75
Re-arranged file structure for tripal_analysis and tripal_cv. Also fixed but in tripal core
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%!s(int64=12) %!d(string=hai) anos |
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spficklin
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3052f89e6d
Removed functionality to submit a job to reset feature permisssion on analysis node. This should be in the configuration settings to be consistent
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%!s(int64=12) %!d(string=hai) anos |
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spficklin
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e46de073f3
Removed unused code from analysis module related to taxonomy and reindexing. We may want to put those back but for now they aren't being used.
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%!s(int64=12) %!d(string=hai) anos |
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spficklin
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06ed7b835c
Removed old organism and analyses lists as this duplicates are default views and views is easy enough to install if someone wants the list
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%!s(int64=12) %!d(string=hai) anos |
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spficklin
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2b4c677d29
Merge branch '6.x-1.x' of git.drupal.org:sandbox/spficklin/1337878 into 6.x-1.x
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%!s(int64=12) %!d(string=hai) anos |
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spficklin
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95f8e5c7b8
Fixed bug in analysis template where the base template wasn't in the hook_theme of the module and also a bug in the template file that kept it from having the variable
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%!s(int64=12) %!d(string=hai) anos |
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Stephen Ficklin
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f772ca11e7
Fixed revisions problem on node update in analysis module
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%!s(int64=12) %!d(string=hai) anos |
 Lacey Sanderson
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14835a0ec9
Added additional documentation to tripal_analysis function headers
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%!s(int64=12) %!d(string=hai) anos |
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Stephen Ficklin
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ba1588b397
Fixed bug where analysis was using vid to find node
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%!s(int64=12) %!d(string=hai) anos |
 Pubudu Basnayaka
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ab377e3619
Tripal Analysis adheres to Drupal coding standards
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%!s(int64=12) %!d(string=hai) anos |
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Pubudu Basnayaka
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b758b80f28
Tripal Analysis adheres to Drupal coding standards
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%!s(int64=12) %!d(string=hai) anos |
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Pubudu Basnayaka
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7de17405a8
Tripal Analysis adheres to Drupal coding standards
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%!s(int64=12) %!d(string=hai) anos |
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Pubudu Basnayaka
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fb8bf61008
Tripal analysis adheres to Drupal coding standards
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%!s(int64=12) %!d(string=hai) anos |
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Stephen Ficklin
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b8ccf71124
fixed stdClass problem
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%!s(int64=12) %!d(string=hai) anos |
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spficklin
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af2ff151e6
Moved most extensions out. Moved base modules out of 'base' directory
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%!s(int64=13) %!d(string=hai) anos |
 alexgl
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95aafcbd13
moving core modules into base
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%!s(int64=13) %!d(string=hai) anos |
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spficklin
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fb76301d42
Fixed hook_access for all modules. This change supports use of other access permission modules, such as "node privacy by role"
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%!s(int64=13) %!d(string=hai) anos |
