 Stephen Ficklin
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2253f7ee3c
Fixed both issues described in #1135. Also made a few additional fixes for issues with PHP 7.4, and adjusted the default layouts for sequences
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4 lat temu |
 Lacey Sanderson
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d5fe19a22a
Attempt to fix Issue #681.
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5 lat temu |
 bradfordcondon
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5a8103068a
run phpstorm base style formatter
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5 lat temu |
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bradfordcondon
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770a7c33a5
update the NCBI taxon db to not go to purl but to NCBI
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6 lat temu |
 Anthony Bretaudeau
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7054d85713
fix a few warnings (and remove many trailing white spaces)
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6 lat temu |
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Stephen Ficklin
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d20f4065e2
Merge branch '7.x-3.x' into 525-tv3-obo_speed_colon
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6 lat temu |
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Stephen Ficklin
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adc5289fc4
Fixed bug with NCIT db creation
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6 lat temu |
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Stephen Ficklin
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823bdbbd57
Fixed a few more bugs
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6 lat temu |
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Stephen Ficklin
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c8dd07b801
OBO Loader all functions complete. Restored chado_insert_cvterm
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6 lat temu |
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Stephen Ficklin
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dbe2f223a2
periodic checkin
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6 lat temu |
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Stephen Ficklin
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4e6cc401be
Periodic check-in
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6 lat temu |
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Stephen Ficklin
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ccd6b1410d
Removed local__gbrowse_image field. it will go to the trpfancy_fields module
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6 lat temu |
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Stephen Ficklin
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a27b2f798a
While trying to fix this the wrong CDS problem I needed the so__cds field to work (which it now is with this commit). I also added a jbrowse viewer so I could easily see how the genes are supposed to look
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6 lat temu |
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Stephen Ficklin
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5d06f20ac2
Fixes to these fields: sep__protocol, schema__additional_type, local__contact.
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6 lat temu |
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Stephen Ficklin
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61495b0eb7
This commit adds support for the protocol, assay and arraydesign tables as well as adds many new terms for chado table columns that didn't have terms associated
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6 lat temu |
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Stephen Ficklin
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de91c6400d
This commit adds support for the protocol, assay and arraydesign tables as well as adds many new terms for chado table columns that didn't have terms associated
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6 lat temu |
 Shawna Spoor
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9096723c9a
found deprecated terms that needed to be swapped out
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6 lat temu |
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Shawna Spoor
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d4ccef15fc
changes to bring the tripal chado api module files into naming standards setout in ticket 330
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6 lat temu |
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Stephen Ficklin
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6689fe9155
Fixed URL for SWO vocab
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7 lat temu |
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Stephen Ficklin
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b39dfbb6ae
Made fixes to the TPUB and TContact db and cv entries and added a sw_url to the vocab details
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7 lat temu |
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Stephen Ficklin
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d370da91d6
WS working with HydraConsole, still need to add fields of content types
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7 lat temu |
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Stephen Ficklin
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53937d9639
Updated web services to work with the HydraConsole
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7 lat temu |
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Stephen Ficklin
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d9e87077f6
Added support for Phylogenetic Tree content type and visualization field
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7 lat temu |
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Stephen Ficklin
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a366e1199b
Converted taxonomy importer to new TripalImporter class and added ability to import taxonomy IDs from NCBI
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7 lat temu |
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Stephen Ficklin
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39c8baf932
A variety of small bug and text fixes
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7 lat temu |
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Stephen Ficklin
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f853f19cb6
Changed Analysis content type to use operation:2945 term. issue #151
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7 lat temu |
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Stephen Ficklin
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6b78d9da21
Added biological sample entity type
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7 lat temu |
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Stephen Ficklin
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ccde805a45
Added necessary code to support the biomaterial table
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7 lat temu |
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Stephen Ficklin
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85d98bdce0
Added an email term for contacts
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7 lat temu |
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Stephen Ficklin
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d95e68d23d
Fixed a few minor bugs. Added the cvtermpath menu item back from Tv2 legacy code. Added an upated to fix a bad cvterm, and fixed the label for the analysis algorithm field
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7 lat temu |
