 spficklin
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98edb56e8d
Fixed bug in permissions for all modules that create node types. When testing if a node type should be created the function should always return true if the permission is set
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11 лет назад |
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spficklin
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a43ef3d007
Made feature node use autocomplete field for type when creating/editing a feature. Also added additional docuemntation for how to add property types to analysies and featuremaps when editing/inserting
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11 лет назад |
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spficklin
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a94ec98cc0
Removed interface for properties, relationships, etc. for features. and fixed bug in inserting analysis properties
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11 лет назад |
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spficklin
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388824ca96
Added feature_featurepos template
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11 лет назад |
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spficklin
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8c6bc34363
Added feature phenotype template
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11 лет назад |
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spficklin
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1156b83efb
Added support for 'organism=genus:speices' attribute for importing GFF files
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11 лет назад |
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spficklin
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57e4e62025
Changed URL path for sequence retrieval
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12 лет назад |
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spficklin
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079f9f0375
Moved form elements from views module to Tripal core and updated seq extract form to use the file upload combo element. Also renamed include files to have a .inc extension rather than a .php extension in the core moduel
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12 лет назад |
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spficklin
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937df20c85
Continued development of seq_extract form
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12 лет назад |
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spficklin
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b87e95f9af
Added AHAH-enabled form for sequence retrieveal
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12 лет назад |
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spficklin
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1400425db6
Added configuration page to tripal_pub module
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12 лет назад |
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spficklin
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5abfa152c7
Changed feature_add_synonmys function to not use a space, but a carriage return
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12 лет назад |
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spficklin
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2756a7cce1
Added brackets around all table names in SQL statements throughout all of Tripal
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12 лет назад |
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spficklin
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fc8149faec
Updated the GFF loader to add a date timestamp to the uniquename if none is provided in the GFF file. This ensures that the value will always be unique. Also, updated the GFF file to use the landmark_type provided by the user to look for the landmark if one is provided. Also changed the GFF loader so that it will recognize an entry for landmark using either the uniquename or the name
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12 лет назад |
 Lacey Sanderson
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fca91cc322
Added more doxygen commenting -there wasn't any groups for the bulk loader or tripal views
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12 лет назад |
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spficklin
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72bf7c5a46
Removed references to old tripal_feature_relagg table
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12 лет назад |
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spficklin
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c423725e2a
Updated Doxygen comments
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12 лет назад |
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spficklin
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bf802025f2
Added support for paging of chado queries, and adjusted support for genotype templates
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12 лет назад |
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spficklin
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c783298b56
Fixed bug in feature/XXX menu callback
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12 лет назад |
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spficklin
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9964a101c6
Removed preprocess function that accidentally got incorporated but was for a custom site. Also removed api function in organism module that didn't fit
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12 лет назад |
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spficklin
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fb42852fa2
Reorganization of functions into api, includes and theme files to make all modules consistent
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12 лет назад |
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spficklin
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d2b7b59b9e
Fixed issues with the library module
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12 лет назад |
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spficklin
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cf8e652b36
Fixed GFF loader for deleting entries in a GFF file. It was broken
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12 лет назад |
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spficklin
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b6444c78ad
Debugging Tripal CV module and created API function for feature relationships
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12 лет назад |
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spficklin
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d7e679c118
Removed match_part from parent/child variables in the alignment preprocess function
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12 лет назад |
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spficklin
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4560a2dce9
Made some additional bug fixes and improvements to the GFF loader
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12 лет назад |
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spficklin
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8924d71248
Added support to the GFF loader for specifying target species and tyeps
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12 лет назад |
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spficklin
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48631d702c
Fixed a bug when registering a new analysis module. If the module already existed in the table it threw an error. Now it checks first. Also fixed bug with chado_query to not add a 'chado.' prefix in the 'substring' psql function. Also updated the tripal_core_chado_update module to return the primary key if a single record is updated and if the return_record option is given.
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12 лет назад |
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spficklin
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0b674f6e64
Removed old relationship aggregator table and code. We don't use it.
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12 лет назад |
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spficklin
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403d2803cf
Fixed issue #1661530
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12 лет назад |
