 Stephen Ficklin
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c1b87f555b
Converted old API functions to new functions
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11 gadi atpakaļ |
 Stephen Ficklin
|
6d5887d2d3
converted all watchdog calls to the new Tripal API function
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11 gadi atpakaļ |
 Lacey Sanderson
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3d39ea2833
Documention: Small tweaks to the documentation to get the defn groups to display properly in the api site
|
11 gadi atpakaļ |
|
Stephen Ficklin
|
df26ed8bea
Stock templates converted. Fixed some other templates
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11 gadi atpakaļ |
|
Stephen Ficklin
|
3df9593c8c
Cleaned out unused functions from feature module
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11 gadi atpakaļ |
|
Stephen Ficklin
|
ee855ade6e
All templates for the feature page are converted except featurepos and phenotype needs testing.
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11 gadi atpakaļ |
|
Stephen Ficklin
|
a77526a07e
Removed ability to preview nodes. The templates are messed up in preview and it's easier to just remove the button
|
11 gadi atpakaļ |
|
spficklin
|
34bfc95115
Nightly checking
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11 gadi atpakaļ |
|
spficklin
|
d922b7a57b
Fixed minor coding review problems
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11 gadi atpakaļ |
|
Stephen Ficklin
|
22519a8f6e
Fixed SQL on sequence retrieval for relationships
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11 gadi atpakaļ |
|
Stephen Ficklin
|
1d831e53d8
Fixed bugs with the sequence extraction when traversing relationships
|
11 gadi atpakaļ |
|
spficklin
|
9b667e1547
Added new functionality to sequence extract function to traverse relationships
|
11 gadi atpakaļ |
|
spficklin
|
8762ae675c
Trying to fix bug in feature API call to extract feature sequence from alignment
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11 gadi atpakaļ |
|
Stephen Ficklin
|
086eb4b649
Fixed bug in sequence retreval API function if parent has no residues
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11 gadi atpakaļ |
|
Stephen Ficklin
|
0ab56cac4a
Updated defline of seq retreival API function to include genus and species of parent equence
|
11 gadi atpakaļ |
|
Stephen Ficklin
|
1f1a1c213a
Updated seq extract with better from field descriptions
|
11 gadi atpakaļ |
|
spficklin
|
2756a7cce1
Added brackets around all table names in SQL statements throughout all of Tripal
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12 gadi atpakaļ |
|
spficklin
|
ed0dad3cf7
Provided some code clenup for the analysis module, added new API functions to the tripal_feature module, and added new case checking to some of the API calls in the Tripal core
|
12 gadi atpakaļ |
|
spficklin
|
c423725e2a
Updated Doxygen comments
|
12 gadi atpakaļ |
|
spficklin
|
fb42852fa2
Reorganization of functions into api, includes and theme files to make all modules consistent
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12 gadi atpakaļ |
|
spficklin
|
b863b7fcee
Ooops type
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12 gadi atpakaļ |
|
spficklin
|
b6444c78ad
Debugging Tripal CV module and created API function for feature relationships
|
12 gadi atpakaļ |
|
spficklin
|
09b02611ed
Fixed memory leaks in the Tripal core API when storing the persistent connection. Alos fixed memory leaks in GFF loader and added loading of FASTA sequences embeded in the GFF file ##FASTA section
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12 gadi atpakaļ |
|
spficklin
|
bce50f164a
Fixed bug with drupal_eval and tripal_core_exclude_type_by_default hook. If a quote was present in the string being evaluated it would create errors
|
12 gadi atpakaļ |
|
spficklin
|
073b43e3e4
Added additional instructions to analysis form. Fixed typo in feature module
|
12 gadi atpakaļ |
|
spficklin
|
cd87d5a56a
Fixed Drupal formatting standards
|
12 gadi atpakaļ |
|
spficklin
|
7617a8ed44
Fixes to GFF loader and feature install module
|
12 gadi atpakaļ |
|
spficklin
|
774562ff8e
Fixed several memory leask
|
12 gadi atpakaļ |
|
Stephen Ficklin
|
226018de46
Fixed sequence formatter function & drush command
|
12 gadi atpakaļ |
|
spficklin
|
67bca35cf9
Fixed incorrectly named function, added ability to get sequence by analysi_id in sequence retrieval drush command
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12 gadi atpakaļ |
