 Stephen Ficklin
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b8ccf71124
fixed stdClass problem
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13 jaren geleden |
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spficklin
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af2ff151e6
Moved most extensions out. Moved base modules out of 'base' directory
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13 jaren geleden |
 alexgl
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95aafcbd13
moving core modules into base
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13 jaren geleden |
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spficklin
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fb76301d42
Fixed hook_access for all modules. This change supports use of other access permission modules, such as "node privacy by role"
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13 jaren geleden |
 ccheng
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9e1584f598
Update permission checks
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13 jaren geleden |
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spficklin
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e51634c8f3
Fixed permissoins problem for compatability with the node_privacy_by_role module
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13 jaren geleden |
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ccheng
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4691cb02cf
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13 jaren geleden |
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ccheng
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5305a34059
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13 jaren geleden |
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spficklin
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7ced61cd61
Updated themeing for analyeses
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14 jaren geleden |
 laceysanderson
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ade56a6971
Tripal: Removed Old Bulk Loader (Stephen) from core module
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14 jaren geleden |
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spficklin
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051e7bd128
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14 jaren geleden |
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spficklin
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0dd8d23333
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14 jaren geleden |
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spficklin
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2b23f6c3e3
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14 jaren geleden |
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spficklin
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5e0ef6ceff
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14 jaren geleden |
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spficklin
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47dcfaa04c
Bug fixes for various modules and themes
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14 jaren geleden |
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spficklin
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5ac6843b37
Fixed bugs and some themeing, and added support for parsing query matches in the blast analysis.
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14 jaren geleden |
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ccheng
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318feef549
fix a bug that analysis_type wasn't picked up correctly when syncing.
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14 jaren geleden |
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spficklin
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05d50175b0
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14 jaren geleden |
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laceysanderson
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0f66f0150d
Added documentation to tripal_core, tripal_analysis, tripal_contact, tripal_stock for the new Doxygen API Site
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14 jaren geleden |
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spficklin
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c616bca1ea
Add analysis requirement to GFF loader
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14 jaren geleden |
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laceysanderson
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a0a61c372e
Made administration paths consistent and added module descriptions/help to new tripal admins for all modules except feature
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14 jaren geleden |
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laceysanderson
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0df9939cce
Updated tripal API to use hooks for table description and retrieve only the table description needed by calling module_invoke_all. Also added foreign key descriptions to tripal_stock.api.inc:all, tripal_cv.api.inc:cvterm, tripal_db.api.inc:dbxref, tripal_analysis.api.inc:all, tripal_feature.api.inc:feature, tripal_organism.api.inc:all, tripal_contact.api.inc:all
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14 jaren geleden |
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laceysanderson
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3cfd7ba884
Added Views Integration for tripal_analysis
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14 jaren geleden |
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spficklin
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3ab974ee52
Added a new tripal_set_active_db function to replace Drupal's set_active_db function. This function allows Tripal to use a chado database in an external location or a chado database within another schema within the Drupal database. This keeps backwards compatibility with older versions of Tripal.
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14 jaren geleden |
 mestato
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832463e97e
The syncing method now tries to figure out what type of analysis is being synchronized by checking the cvterm "analysis_type". This cvterm should be added to each analysis by the individual analysis modules or the user if the upload is directly into chado. The value for this cvterm should reflect the name of the module, "tripal_analysis_unigene", "tripal_analysis_blast", etc.
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14 jaren geleden |
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mestato
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6729e33bcd
Added missing } on line 469.
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14 jaren geleden |
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mestato
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61a9834df0
Add abililty for analysis module to detect a unigene-type analysis. Previously made unigene type analyses into generic type analyses.
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14 jaren geleden |
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mestato
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442a75c16a
Fixed typo where interval was missing dollar sign.
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14 jaren geleden |
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mestato
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4e3a64a161
Complete revision fo the cleanup method. Still deletes any orphans between node and chado_analysis in drupal but also checks for orphans without records in chado.
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14 jaren geleden |
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mestato
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1b4bb14abc
Fixed error Parameter 1 to theme_tripal_analysis_analysis_table() expected to be a reference, value given in /local/sites/drupal/sites/dev.citrusgenomedb.org/modules/devel_themer/devel_themer.module on line 418. Also changed tripal_analysis_analysis_table to tripal_analysis_analysis_page to be more clear.
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14 jaren geleden |
